Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq718 141 2e-28 seq135 132 1e-25 seq4581 93.3 1e-13 seq620 84.2 5e-11 >seq718 Length=674 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||||||| | || |||||||| || || | || || || || || Sbjct 49 CAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCCGAT 108 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| || ||||| ||||||||||| || ||||| || || ||| Sbjct 109 ACGATTGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAACAA 168 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || ||||| | |||||||| | ||||| ||||||||| || Sbjct 169 CGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAATATC 228 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||||||||| || ||||| | || ||| ||||| Sbjct 229 CAAAAAGAATCCACTTTGCATTTGGTGTTGCGACTC 264 Score = 120 bits (132), Expect = 7e-22 Identities = 161/223 (72%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||| | || |||||||| ||||| | || || ||| || || Sbjct 277 CAGATTTTCGTTAAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCCGAT 336 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| || || |||||||||||||| || || || || || ||| Sbjct 337 ACAATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAACAA 396 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATG---GAA----GGACTCTTGCCGATTA 178096 || | || ||||| || ||||| | ||||||| ||| | ||||| |||||| Sbjct 397 CGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACTCNGAACTCTCAGCGATTA 456 Query 178097 TAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||| ||||||||||||| || |||| | || ||| | ||| Sbjct 457 TAATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTC 499 Score = 100 bits (110), Expect = 7e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||||||| | || |||||||| ||||| | || || || || || Sbjct 512 CAAATTTTCGTGAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTTGAGCCTTCCGAT 571 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| || ||||| || |||||||| || || || || || ||| Sbjct 572 ACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAACAA 631 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTC 178086 || | || ||||| || ||||| | |||||||| | |||| Sbjct 632 CGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACTC 674 >seq135 Length=1279 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || |||||| | || ||||| || || || | || |||||| || || Sbjct 435 CAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCCGAT 494 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| || ||||| || |||||||| || ||||| || |||||| Sbjct 495 ACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCAA 554 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || ||||| | |||||||| | ||||| ||||||||| || Sbjct 555 CGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAATATC 614 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||||||||| || |||| | || ||| | ||| Sbjct 615 CAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTC 650 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| | || |||||||| ||||| | || || ||| || || Sbjct 207 CAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCCGAT 266 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| || || |||||||||||||| || || || || || ||| Sbjct 267 ACTATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAACAA 326 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | |||||||| | ||||| ||||||||| || Sbjct 327 CGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAATATC 386 Query 178104 CAAAAAGAATCAAC 178117 ||||||||||| || Sbjct 387 CAAAAAGAATCCAC 400 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 177948 GGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAG 178007 |||||||| ||||| | || |||||| || || || || || || |||||| || Sbjct 3 GGAAAAACTATCACTTTGGAAGTGGAACCTTCCGATACGATTGAAAATGTCAAAGCTAAA 62 Query 178008 ATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAG 178067 ||||| ||||||||||| || || || || || ||||| | || ||||| || ||||| Sbjct 63 ATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAAACAA 122 Query 178068 CTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTT 178127 | |||||||| || || | |||||| || |||| |||||||| || ||||| | Sbjct 123 TTGGAAGATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTTG 182 Query 178128 GTTTTGAGACTC 178139 || ||| ||||| Sbjct 183 GTGTTGCGACTC 194 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| | || |||||||| || || | || || ||| || || Sbjct 663 CAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCCGAT 722 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| || ||||| || |||||||| || || || || || ||| Sbjct 723 ACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAACAA 782 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | |||||||| || || | |||||| || | Sbjct 783 CGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAATATT 842 Query 178104 CAAAAAGAATCAAC 178117 ||||||||||| || Sbjct 843 CAAAAAGAATCCAC 856 >seq4581 Length=275 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || |||||| || || || || |||||||| || ||||| || |||||||| || || Sbjct 275 AATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTAATT 216 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 || || || ||||| | |||||||| || || | |||||||||| | || |||||| Sbjct 215 TTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTATAACATTCAGAAAGAA 156 Query 178113 TCAACACTGCATCTTGTTTTG 178133 ||||| ||||| | || ||| Sbjct 155 TCAACTTTGCATTTGGTATTG 135 >seq620 Length=8710 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||| | || |||||||| ||||| | || |||||| || || Sbjct 8289 CAAATTTTTGTTAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTGGAACCTTCCGAT 8348 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || || || ||||||||| |||||||| ||||||||||| Sbjct 8349 ACAATTGAAAACGTCAAAGCTAAGATTCAAGACAAAGAAGG 8389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203440325878840