Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq718 141 2e-28
seq135 132 1e-25
seq4581 93.3 1e-13
seq620 84.2 5e-11
>seq718
Length=674
Score = 141 bits (156), Expect = 2e-28
Identities = 161/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||||||| | || |||||||| || || | || || || || ||
Sbjct 49 CAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCCGAT 108
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || |||||| || ||||| ||||||||||| || ||||| || || |||
Sbjct 109 ACGATTGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAACAA 168
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || ||||| || ||||| | |||||||| | ||||| ||||||||| ||
Sbjct 169 CGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAATATC 228
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139
||||||||||| || ||||| | || ||| |||||
Sbjct 229 CAAAAAGAATCCACTTTGCATTTGGTGTTGCGACTC 264
Score = 120 bits (132), Expect = 7e-22
Identities = 161/223 (72%), Gaps = 7/223 (3%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| |||||| | || |||||||| ||||| | || || ||| || ||
Sbjct 277 CAGATTTTCGTTAAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCCGAT 336
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || |||||| || || |||||||||||||| || || || || || |||
Sbjct 337 ACAATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAACAA 396
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATG---GAA----GGACTCTTGCCGATTA 178096
|| | || ||||| || ||||| | ||||||| ||| | ||||| ||||||
Sbjct 397 CGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACTCNGAACTCTCAGCGATTA 456
Query 178097 TAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139
||| ||||||||||||| || |||| | || ||| | |||
Sbjct 457 TAATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTC 499
Score = 100 bits (110), Expect = 7e-16
Identities = 120/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||||||||||||| | || |||||||| ||||| | || || || || ||
Sbjct 512 CAAATTTTCGTGAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTTGAGCCTTCCGAT 571
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || |||||| || ||||| || |||||||| || || || || || |||
Sbjct 572 ACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAACAA 631
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTC 178086
|| | || ||||| || ||||| | |||||||| | ||||
Sbjct 632 CGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACTC 674
>seq135
Length=1279
Score = 132 bits (146), Expect = 1e-25
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || |||||| | || ||||| || || || | || |||||| || ||
Sbjct 435 CAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCCGAT 494
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || |||||| || ||||| || |||||||| || ||||| || ||||||
Sbjct 495 ACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCAA 554
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || || || ||||| | |||||||| | ||||| ||||||||| ||
Sbjct 555 CGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAATATC 614
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139
||||||||||| || |||| | || ||| | |||
Sbjct 615 CAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTC 650
Score = 125 bits (138), Expect = 2e-23
Identities = 144/194 (74%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||||||||| | || |||||||| ||||| | || || ||| || ||
Sbjct 207 CAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCCGAT 266
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || |||||| || || |||||||||||||| || || || || || |||
Sbjct 267 ACTATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAACAA 326
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || || || || ||||| | |||||||| | ||||| ||||||||| ||
Sbjct 327 CGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAATATC 386
Query 178104 CAAAAAGAATCAAC 178117
||||||||||| ||
Sbjct 387 CAAAAAGAATCCAC 400
Score = 113 bits (124), Expect = 1e-19
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 177948 GGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAG 178007
|||||||| ||||| | || |||||| || || || || || || |||||| ||
Sbjct 3 GGAAAAACTATCACTTTGGAAGTGGAACCTTCCGATACGATTGAAAATGTCAAAGCTAAA 62
Query 178008 ATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAG 178067
||||| ||||||||||| || || || || || ||||| | || ||||| || |||||
Sbjct 63 ATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAAACAA 122
Query 178068 CTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTT 178127
| |||||||| || || | |||||| || |||| |||||||| || ||||| |
Sbjct 123 TTGGAAGATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTTG 182
Query 178128 GTTTTGAGACTC 178139
|| ||| |||||
Sbjct 183 GTGTTGCGACTC 194
Score = 102 bits (112), Expect = 2e-16
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| ||||| | || |||||||| || || | || || ||| || ||
Sbjct 663 CAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCCGAT 722
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || |||||| || ||||| || |||||||| || || || || || |||
Sbjct 723 ACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAACAA 782
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || || || || ||||| | |||||||| || || | |||||| || |
Sbjct 783 CGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAATATT 842
Query 178104 CAAAAAGAATCAAC 178117
||||||||||| ||
Sbjct 843 CAAAAAGAATCCAC 856
>seq4581
Length=275
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052
|| |||||| || || || || |||||||| || ||||| || |||||||| || ||
Sbjct 275 AATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTAATT 216
Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112
|| || || ||||| | |||||||| || || | |||||||||| | || ||||||
Sbjct 215 TTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTATAACATTCAGAAAGAA 156
Query 178113 TCAACACTGCATCTTGTTTTG 178133
||||| ||||| | || |||
Sbjct 155 TCAACTTTGCATTTGGTATTG 135
>seq620
Length=8710
Score = 84.2 bits (92), Expect = 5e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || |||||| | || |||||||| ||||| | || |||||| || ||
Sbjct 8289 CAAATTTTTGTTAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTGGAACCTTCCGAT 8348
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024
|| || || ||||||||| |||||||| |||||||||||
Sbjct 8349 ACAATTGAAAACGTCAAAGCTAAGATTCAAGACAAAGAAGG 8389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203440325878840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |