Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq17074 86.0 5e-12
>seq17074
Length=21176
Score = 86.0 bits (94), Expect = 5e-12
Identities = 341/524 (65%), Gaps = 12/524 (2%)
Strand=Plus/Minus
Query 18615 TTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGG 18674
||||| || | || || ||||| || || ||| | || ||||| || ||| || | |||
Sbjct 4579 TTTCCACTGCTCACCACCAAGCGCGTCTTCTGGCGCGCTGTCGTTGAGGAGCTGCTCTGG 4520
Query 18675 TTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGAT-ATACACATATGGGA 18733
||||| | ||| || ||| |||| ||| || | ||||| ||||| || |||||
Sbjct 4519 TTTATACACGGCAAGACGGATGCCAAGCTACT-GCAGGCAAAGAACATACATATCTGGGA 4461
Query 18734 TAT--ATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACGGGG 18791
| ||| |||| | | ||||| || | || || | | | |||
Sbjct 4460 TGGGAATAGCAATCGTG--AGTTTCTCGATCTGTGCGGTTTTACGGATCGCGTCGAGGGC 4403
Query 18792 GACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGT 18851
||||| || || | || ||||| |||||| | || ||||| || | || | |||
Sbjct 4402 GACCTGGGGCCGGTATATGGCTTTCAGTGGCGTCACTTTGGCGCCAAGTACCGCGGCTG- 4344
Query 18852 CAATCAA-ACTATTTACAGCAAGGAA-TCGATCAGCTGCAAACTGTTATAGATACAATTA 18909
|| | |||||| | || ||| | ||||||| |||||| || ||| | || || |
Sbjct 4343 CAGCGACGACTATTC-CGGCGAGGGAGTCGATCAACTGCAACGCGTCATACACACCAT-A 4286
Query 18910 AAACAAACCCAGAAAGC-CGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCC 18968
|| | ||| | ||||| ||||| || || || ||||||||| |||||||||
Sbjct 4285 CGCCACGATCCGAACGATCGACGCATGATCATGTCCTCGTGGAATCCATCGGATATCCCA 4226
Query 18969 TTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTA 19028
|||| ||| || || || ||| | ||||| || || || | || || ||
Sbjct 4225 CAGATGGCACTGCCGCCGTGCCACTGTCTGGCCCAGTTCTATGTGGCGCAGGGCGAGCTA 4166
Query 19029 TCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCT 19088
|||||||| | || ||| | | |||||||| || || || || |||||||||||
Sbjct 4165 TCCTGCCAGCTCTATCAGCGCAGTGCTGATATGGGTCTGGGTGTGCCCTTCAACATTGCA 4106
Query 19089 GGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACT 19132
||||| || || || | ||| | |||||||| || || ||
Sbjct 4105 TCCTATGCGCTGCTCACGTGCATGATCGCGCATGTGACGGGTCT 4062
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399337481739000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |