Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq17074 86.0 5e-12 >seq17074 Length=21176 Score = 86.0 bits (94), Expect = 5e-12 Identities = 341/524 (65%), Gaps = 12/524 (2%) Strand=Plus/Minus Query 18615 TTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGG 18674 ||||| || | || || ||||| || || ||| | || ||||| || ||| || | ||| Sbjct 4579 TTTCCACTGCTCACCACCAAGCGCGTCTTCTGGCGCGCTGTCGTTGAGGAGCTGCTCTGG 4520 Query 18675 TTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGAT-ATACACATATGGGA 18733 ||||| | ||| || ||| |||| ||| || | ||||| ||||| || ||||| Sbjct 4519 TTTATACACGGCAAGACGGATGCCAAGCTACT-GCAGGCAAAGAACATACATATCTGGGA 4461 Query 18734 TAT--ATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACGGGG 18791 | ||| |||| | | ||||| || | || || | | | ||| Sbjct 4460 TGGGAATAGCAATCGTG--AGTTTCTCGATCTGTGCGGTTTTACGGATCGCGTCGAGGGC 4403 Query 18792 GACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGT 18851 ||||| || || | || ||||| |||||| | || ||||| || | || | ||| Sbjct 4402 GACCTGGGGCCGGTATATGGCTTTCAGTGGCGTCACTTTGGCGCCAAGTACCGCGGCTG- 4344 Query 18852 CAATCAA-ACTATTTACAGCAAGGAA-TCGATCAGCTGCAAACTGTTATAGATACAATTA 18909 || | |||||| | || ||| | ||||||| |||||| || ||| | || || | Sbjct 4343 CAGCGACGACTATTC-CGGCGAGGGAGTCGATCAACTGCAACGCGTCATACACACCAT-A 4286 Query 18910 AAACAAACCCAGAAAGC-CGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCC 18968 || | ||| | ||||| ||||| || || || ||||||||| ||||||||| Sbjct 4285 CGCCACGATCCGAACGATCGACGCATGATCATGTCCTCGTGGAATCCATCGGATATCCCA 4226 Query 18969 TTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTA 19028 |||| ||| || || || ||| | ||||| || || || | || || || Sbjct 4225 CAGATGGCACTGCCGCCGTGCCACTGTCTGGCCCAGTTCTATGTGGCGCAGGGCGAGCTA 4166 Query 19029 TCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCT 19088 |||||||| | || ||| | | |||||||| || || || || ||||||||||| Sbjct 4165 TCCTGCCAGCTCTATCAGCGCAGTGCTGATATGGGTCTGGGTGTGCCCTTCAACATTGCA 4106 Query 19089 GGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACT 19132 ||||| || || || | ||| | |||||||| || || || Sbjct 4105 TCCTATGCGCTGCTCACGTGCATGATCGCGCATGTGACGGGTCT 4062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399337481739000