Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq5260 104 2e-17 >seq5260 Length=19401 Score = 104 bits (114), Expect = 2e-17 Identities = 258/386 (67%), Gaps = 12/386 (3%) Strand=Plus/Minus Query 101714 TCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAA 101773 ||||| || || || | ||| || || ||| || ||| |||||||| |||||| | Sbjct 12314 TCTCCCATGGTGTGCACAAAGTCGCCCGGCTTGAGGCCAGTCACATGAGCGATCATGTAG 12255 Query 101774 GTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTT 101833 || | | | ||| ||||||||||| ||||| || || ||||| ||||| || | Sbjct 12254 GTGAGCAACGCATACGAGGCAATGTTAAAGGGCACACCCAAACCCATGTCAGCGCTTCGT 12195 Query 101834 TGATACAGTTGACAGGAAAGCTTTCCA------TCACAGACATAAAATTGACTTAATACA 101887 ||||| | |||||||| |||| ||| | | ||||| || || || Sbjct 12194 TGATATAACTGACAGGACAGCTCGCCACGATCCTGGGACACATAGAACTGGGCGAAGCAG 12135 Query 101888 TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATC 101947 || |||||||||| | ||||||| || || || |||||| ||| |||| | ||| Sbjct 12134 TGGCAAGGCGGCAGCGCCATTTTTGGTATATCAATTGGATTCCAGGCAGACATAATAATC 12075 Query 101948 CTTCTATCTGTAGGGTTTGTT-TTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCC 102006 | || ||||| | || ||||| ||| || ||||||| ||| | || || | || Sbjct 12074 CGTCGATCTG-ATGGATTGTTGCGTATGGTGTCAATCACCTGACGCAGCTGATCGATGCC 12016 Query 102007 TTCTCCTTTATAATCG-CGCCCAACACCT-TTATATTCTGCTCCGAAATGCCTCCACTGA 102064 | ||| |||| ||| || | ||| | ||||| ||| || || || | ||| ||| Sbjct 12015 CTTGCCTGTATAGTCGTCGTC--ACAGGTGCCATATTGTGCGCCAAAGTGGCGCCATTGA 11958 Query 102065 AATCCATACACAGGTCCAAGATCTCC 102090 || ||||| || ||||| | ||| || Sbjct 11957 AAACCATAGACGGGTCCCAAATCGCC 11932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361100625984200