Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq20705 416 3e-111 seq13173 205 1e-47 >seq20705 Length=54059 Score = 416 bits (460), Expect = 3e-111 Identities = 1220/1854 (66%), Gaps = 38/1854 (2%) Strand=Plus/Plus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAA 52887 || ||||| || || | || |||||||| ||||| || || || || |||| |||||| Sbjct 37368 GCAGGTTTTGTTCGCAAGTAATACATTCCTGTTTTAAGCCC-AGCCTTCCATGAGTAAAA 37426 Query 52888 ATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 52947 ||| || || ||||| ||| | || ||||| | || ||||| | || ||||| Sbjct 37427 ATGTATCGAAGTCAGTTTTCCATAGTTGGGCTCTGCCACGTGAATATTAAAGGACTGACT 37486 Query 52948 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTT 53006 |||||| || || || ||||| || |||||||||||||| | | ||| ||| |||| Sbjct 37487 TTGATCTATAAAAGCACCCCTATCAGCAGCCATTTTTATTGTTGA-TTTAACGGAGATTT 37545 Query 53007 CCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATA 53062 |||| | || || || || || | | | || |||| | | || |||||| Sbjct 37546 CCCATACGGTCTTGTACAAGTCTCGGACG-TGTTGAGGAATAGAATCAATGTTTTGAATA 37604 Query 53063 GATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 53122 || |||| | || || ||||| || || |||| ||||| | || || Sbjct 37605 GAACCACGGCTTGATATTATTTGGTTCTTCATGTCGTCATCCCATAGGTCCAATTCTGTC 37664 Query 53123 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 53182 ||| ||| || || || |||| |||||||| ||||| ||||| || || | | ||| Sbjct 37665 AAATCTCGTAGTAGGTGATGATTTACTACTTGGAATTCACCAGATAACACCCGTCTGGTG 37724 Query 53183 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 53242 ||||||||| || ||||| || | || |||||||| |||| ||||| ||||| ||| Sbjct 37725 TAAATATTAGATGTGTACGGCTCGAAGGATTCATTATTACCCATTATTTGGGCAGTGGAT 37784 Query 53243 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 53302 || || ||||| ||||| | | ||| ||| | || |||| | |||| | || | | Sbjct 37785 GCTGTAGGCATTGGTGCAATAAGCAAAGAATTGCGAACGCCGTGT-TTCTTAATTGACGT 37843 Query 53303 TTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 53361 |||| || | ||| | ||| | ||| | || |||| Sbjct 37844 TTTAAGTGTATTCCAGTCCCATAAATCTGTTGGAGTTTTATTCCACATGTCATACTGTAA 37903 Query 53362 AATACCGTTACTGGCGTACGAT-CCTACATATGTATCGTA-TGGTCCT-TCCTTCTCAGC 53418 |||||| ||||| | | | | ||| ||||||| ||||| | | | | | ||| | || Sbjct 37904 AATACCTTTACTCAC-TGGGCTGCCTTCATATGTTTCGTAGTAGCCATGTTCTTGT--GC 37960 Query 53419 TAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG 53478 || || ||||| ||||| | || || |||| || || ||||| |||| || ||||| Sbjct 37961 GAGCTCGCAACTTGCCTCGAGCGCTCCAAAATATATTGTCTCGAAAATCTGCTGGTTTAG 38020 Query 53479 ATCTTGTGCTTCCAGGCTATCAAATGGATAAT---TTAAGAGAATAAACGCGTCTGCTAA 53535 | ||| || ||| || | ||||| |||||| | | || || || || Sbjct 38021 AAGAGATGCCTCATCGCTTTCGTAAGGATACCGCATTAAGA---TCAGTGCATCGGCAAA 38077 Query 53536 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 53595 || ||||||||||| || ||||| | || || || || ||| ||| ||||| | Sbjct 38078 GCCCTGAACACCAATTCCAATAGGACGGTGCCTTAAGTTCGATTTTTTAGCCTCTGGTAG 38137 Query 53596 AGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG---ACAATTACTTTGACCAC 53652 ||||||| | || ||||| || ||||| || | |||| | ||||| ||||| || Sbjct 38138 AGGATAAAAGTTGATATCAATTATTTTGTTCAAGTTTTTTGTAACAAT--CTTTGTT-AC 38194 Query 53653 ATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTA---TTACAAACATGTTCAATGCAAT 53709 ||| |||| ||| ||| || ||| | || | |||||||| || | || || Sbjct 38195 ATCTTTCAATTTTTTAAAGTCGTATTTTTTTTCGGGAGTGACAAACATATTGAGGGCTAT 38254 Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769 || || | || ||||| || | |||| || | | ||| | | || || || || Sbjct 38255 GGAAGCTAAGTTGCAAACAGCAATTTCATCAGGGGCGGAATACTCCACAATTTCGGTACA 38314 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829 | ||| || || || |||||||| | |||||||||||||| || ||||| | ||| Sbjct 38315 TAAATTGCTGCATTTAATGGTTCCAACGTTTTGTTGATTACTTTTGCGATTACAGGAATC 38374 Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889 || | || || |||| ||||||||||| | || || || || || || ||| | Sbjct 38375 TTTGAACAGCATATATGGAGTACCAGTTTCTACTTGAGACTCAATTATAGCAAACCACA- 38433 Query 53890 GACAC-GAGCCTTTATTATA-GATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAAT 53947 || | | || || ||| | |||| | | | || || || | ||| ||| | | Sbjct 38434 GAGATTGCGCTTTAATTGTTCGATTAGCACGGCCTTCCTGTT-CATATTTGACATAGAGT 38492 Query 53948 CGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 54007 |||||||| ||||||||||||| | || |||||||||| || || |||||||| Sbjct 38493 TTATCAAACTCTTCTCCCCAAACATCATGTAAGCCAGGACATTTATGTGGGCACATCAAT 38552 Query 54008 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 ||||| || | | | | | || || |||||||| ||||| || ||||| | ||| ||| Sbjct 38553 GACCAATCCTCATTAGCTTCAACACGCTTCATAAAAAGATCTGGTATCCATAAAGC-ATA 38611 Query 54068 -AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 54126 || ||||||| || | || |||||| || || || || ||||| | || | || | Sbjct 38612 GAAAAGATCTCGGGCACGATTTTCCTCCTTGCCAGTGTTTTTTTTTAAGTCTAAAAATTC 38671 Query 54127 CATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCC 54186 | | || |||||||| ||||| || || || | | | ||||| || || || Sbjct 38672 AAACACGTCTGAATGCCAAGGTTCTAAATAAATTGCAAAGGCACCAGGACGCTTTCCACC 38731 Query 54187 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 54246 |||||| || | || | ||| ||| ||| ||||||| | |||||| | | |||||| Sbjct 38732 TCCCTGGTCAACATAGCGAGCCACGTTGTTAAAAACTCTTAGCATTGGCACCAAACCATT 38791 Query 54247 GGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 54306 || | ||||| || || |||| | | || | |||||||| || || Sbjct 38792 TGAAGTTCCATTAGTTCCACAGATCGAAGTACCTTTAGCACGAATGCAGTGAACGTTTAT 38851 Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366 || || || || || ||| || || | ||||||| ||| | | | | | || || Sbjct 38852 CCCGATTCCACCAGCTGATTTGGATATCATTGCGCATTGTTCGACGGATTTAAATATTCC 38911 Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426 || || |||| ||| ||| |||| |||||||| |||| ||| | ||| | || Sbjct 38912 TTCAATTGAATCAGCCACCATCGTAAGAAGAAAACACGACGACAGTTGCGGCCGATTTGT 38971 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 | || || | || || ||||| || || || || || ||||| | ||||| Sbjct 38972 AGCTGCCGCGAAAAGTGTTGGCGAAGCATGGGTGAAATATCGCTCGGAAAGCAAGTTGTA 39031 Query 54487 CGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 54546 ||| || | || | || ||||| ||| ||||| | || |||||||||||||| Sbjct 39032 CGTTTCAACTGCCGCATCGATATCTTCGCCATGTATTCCAATGGCCACACGCATTAACAT 39091 Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 ||||| || | |||| | || || ||||| |||| || || || ||| | || Sbjct 39092 ATGCTGTGGGCGTTCAGCAATTTTCCCATTTATCTTCAATAAATATGAACGTTCAAGCGT 39151 Query 54607 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660 |||||| ||||||||||||||| |||||| || || ||||| ||| ||||||| Sbjct 39152 TTTAAATCCAAAATAGTTGTATCCAAAGTCCCGATCATAAATTATAGCTGAGTT 39205 >seq13173 Length=15772 Score = 205 bits (226), Expect = 1e-47 Identities = 473/704 (67%), Gaps = 9/704 (1%) Strand=Plus/Minus Query 23969 ATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTAT-AAGTTTAA 24027 ||| |||||||| || || ||| ||||| || |||||||| || || ||||||| Sbjct 14610 ATCGGCGACAAATTCAATGTATTCAGACATCAGTTTGCAATTCATGCCAATTAAGTTTA- 14552 Query 24028 CTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATC 24087 | || | ||| | || || || || ||||| || || || |||| || || || Sbjct 14551 CGGGCAAAGCGTCTGTGAGGAACTCCTGTTCGATGACTACAGCATCTGAAATGATT--TC 14494 Query 24088 T-TACTGT-TTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 24145 || || ||| ||| || | | | | ||| | ||||||| || ||||| Sbjct 14493 AATAATGCGTTCACGACTGGGACGTTGAACCAGATGCTGGAACATCAGCACGGCAAAATC 14434 Query 24146 GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 24205 ||| |||||||||||||| | |||||| || || || || || || |||||||| || Sbjct 14433 GCAATGTAGACCCTCGTCGCGTGAAATTAACTCATTTGAGAAGGTAAGACCGGGCATAAG 14374 Query 24206 GCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTAC 24265 || ||||| || | |||||| || || || || ||| |||||| || ||||| || Sbjct 14373 ACCGCGCTTCTTCAACCAAAAGATTGAAGCGAAGCTGCCACTAAAGAAGATGCCTTCGAC 14314 Query 24266 TGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC--GCTGTCATG-TATCCACTTTTG 24322 || ||||| || |||| | ||| ||| || ||| || | | | ||||| | Sbjct 14313 GGCGGCAAAAGCTATAATGCGTTCACCAAAATTGGCTGACTTTGAAGAAATCCAAGCGAG 14254 Query 24323 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 24382 ||||| || ||||| ||||| ||||| ||||| || ||||| || ||||||| Sbjct 14253 GGCCCAGTCCGCCTTGCGCTTTACTGCTGGCATAGTCTCAATCGCATTGAAAAGATAGTC 14194 Query 24383 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 24442 || || | ||| | ||| || || || | | || |||||||||||||| | Sbjct 14193 GCGTTGATGAGGATCACGTATATAGGTGTCGATAAGTACGCTGTACATTTCCGAATGCAC 14134 Query 24443 GTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTAT 24502 ||| || ||||| ||||| || || || ||||| | |||||||| ||||| || || Sbjct 14133 GTTCTCCATGGCAATTTGGAAGCCATAAAAACAACGTGCCTCGGTTATCTGCACCTCCTG 14074 Query 24503 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 24562 | ||| |||||| | | |||||| || || || || || || || || || ||||| Sbjct 14073 GCTAAAGCGTTCTACCAGATTTTCGTTGACAATGCCATCTGATGCGGCGAAGAATGCCAA 14014 Query 24563 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 24622 ||||| |||||| | || | || || ||||||||| | || || || Sbjct 14013 CACATGAGATATAAAGTGACGCTCATTGTCAGTCAGGCGATTCCAATCTGTCATGTCCTT 13954 Query 24623 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 || | |||||| ||||| || ||||| || ||||| || |||| Sbjct 13953 GGACAGATCCACCTCTTCGACCGTCCAGAAAGATGCTTCGGCCT 13910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593467784016000