Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq20705 416 3e-111
seq13173 205 1e-47
>seq20705
Length=54059
Score = 416 bits (460), Expect = 3e-111
Identities = 1220/1854 (66%), Gaps = 38/1854 (2%)
Strand=Plus/Plus
Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAA 52887
|| ||||| || || | || |||||||| ||||| || || || || |||| ||||||
Sbjct 37368 GCAGGTTTTGTTCGCAAGTAATACATTCCTGTTTTAAGCCC-AGCCTTCCATGAGTAAAA 37426
Query 52888 ATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 52947
||| || || ||||| ||| | || ||||| | || ||||| | || |||||
Sbjct 37427 ATGTATCGAAGTCAGTTTTCCATAGTTGGGCTCTGCCACGTGAATATTAAAGGACTGACT 37486
Query 52948 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTT 53006
|||||| || || || ||||| || |||||||||||||| | | ||| ||| ||||
Sbjct 37487 TTGATCTATAAAAGCACCCCTATCAGCAGCCATTTTTATTGTTGA-TTTAACGGAGATTT 37545
Query 53007 CCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATA 53062
|||| | || || || || || | | | || |||| | | || ||||||
Sbjct 37546 CCCATACGGTCTTGTACAAGTCTCGGACG-TGTTGAGGAATAGAATCAATGTTTTGAATA 37604
Query 53063 GATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 53122
|| |||| | || || ||||| || || |||| ||||| | || ||
Sbjct 37605 GAACCACGGCTTGATATTATTTGGTTCTTCATGTCGTCATCCCATAGGTCCAATTCTGTC 37664
Query 53123 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 53182
||| ||| || || || |||| |||||||| ||||| ||||| || || | | |||
Sbjct 37665 AAATCTCGTAGTAGGTGATGATTTACTACTTGGAATTCACCAGATAACACCCGTCTGGTG 37724
Query 53183 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 53242
||||||||| || ||||| || | || |||||||| |||| ||||| ||||| |||
Sbjct 37725 TAAATATTAGATGTGTACGGCTCGAAGGATTCATTATTACCCATTATTTGGGCAGTGGAT 37784
Query 53243 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 53302
|| || ||||| ||||| | | ||| ||| | || |||| | |||| | || | |
Sbjct 37785 GCTGTAGGCATTGGTGCAATAAGCAAAGAATTGCGAACGCCGTGT-TTCTTAATTGACGT 37843
Query 53303 TTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 53361
|||| || | ||| | ||| | ||| | || ||||
Sbjct 37844 TTTAAGTGTATTCCAGTCCCATAAATCTGTTGGAGTTTTATTCCACATGTCATACTGTAA 37903
Query 53362 AATACCGTTACTGGCGTACGAT-CCTACATATGTATCGTA-TGGTCCT-TCCTTCTCAGC 53418
|||||| ||||| | | | | ||| ||||||| ||||| | | | | | ||| | ||
Sbjct 37904 AATACCTTTACTCAC-TGGGCTGCCTTCATATGTTTCGTAGTAGCCATGTTCTTGT--GC 37960
Query 53419 TAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG 53478
|| || ||||| ||||| | || || |||| || || ||||| |||| || |||||
Sbjct 37961 GAGCTCGCAACTTGCCTCGAGCGCTCCAAAATATATTGTCTCGAAAATCTGCTGGTTTAG 38020
Query 53479 ATCTTGTGCTTCCAGGCTATCAAATGGATAAT---TTAAGAGAATAAACGCGTCTGCTAA 53535
| ||| || ||| || | ||||| |||||| | | || || || ||
Sbjct 38021 AAGAGATGCCTCATCGCTTTCGTAAGGATACCGCATTAAGA---TCAGTGCATCGGCAAA 38077
Query 53536 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 53595
|| ||||||||||| || ||||| | || || || || ||| ||| ||||| |
Sbjct 38078 GCCCTGAACACCAATTCCAATAGGACGGTGCCTTAAGTTCGATTTTTTAGCCTCTGGTAG 38137
Query 53596 AGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG---ACAATTACTTTGACCAC 53652
||||||| | || ||||| || ||||| || | |||| | ||||| ||||| ||
Sbjct 38138 AGGATAAAAGTTGATATCAATTATTTTGTTCAAGTTTTTTGTAACAAT--CTTTGTT-AC 38194
Query 53653 ATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTA---TTACAAACATGTTCAATGCAAT 53709
||| |||| ||| ||| || ||| | || | |||||||| || | || ||
Sbjct 38195 ATCTTTCAATTTTTTAAAGTCGTATTTTTTTTCGGGAGTGACAAACATATTGAGGGCTAT 38254
Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769
|| || | || ||||| || | |||| || | | ||| | | || || || ||
Sbjct 38255 GGAAGCTAAGTTGCAAACAGCAATTTCATCAGGGGCGGAATACTCCACAATTTCGGTACA 38314
Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829
| ||| || || || |||||||| | |||||||||||||| || ||||| | |||
Sbjct 38315 TAAATTGCTGCATTTAATGGTTCCAACGTTTTGTTGATTACTTTTGCGATTACAGGAATC 38374
Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889
|| | || || |||| ||||||||||| | || || || || || || ||| |
Sbjct 38375 TTTGAACAGCATATATGGAGTACCAGTTTCTACTTGAGACTCAATTATAGCAAACCACA- 38433
Query 53890 GACAC-GAGCCTTTATTATA-GATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAAT 53947
|| | | || || ||| | |||| | | | || || || | ||| ||| | |
Sbjct 38434 GAGATTGCGCTTTAATTGTTCGATTAGCACGGCCTTCCTGTT-CATATTTGACATAGAGT 38492
Query 53948 CGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 54007
|||||||| ||||||||||||| | || |||||||||| || || ||||||||
Sbjct 38493 TTATCAAACTCTTCTCCCCAAACATCATGTAAGCCAGGACATTTATGTGGGCACATCAAT 38552
Query 54008 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067
||||| || | | | | | || || |||||||| ||||| || ||||| | ||| |||
Sbjct 38553 GACCAATCCTCATTAGCTTCAACACGCTTCATAAAAAGATCTGGTATCCATAAAGC-ATA 38611
Query 54068 -AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 54126
|| ||||||| || | || |||||| || || || || ||||| | || | || |
Sbjct 38612 GAAAAGATCTCGGGCACGATTTTCCTCCTTGCCAGTGTTTTTTTTTAAGTCTAAAAATTC 38671
Query 54127 CATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCC 54186
| | || |||||||| ||||| || || || | | | ||||| || || ||
Sbjct 38672 AAACACGTCTGAATGCCAAGGTTCTAAATAAATTGCAAAGGCACCAGGACGCTTTCCACC 38731
Query 54187 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 54246
|||||| || | || | ||| ||| ||| ||||||| | |||||| | | ||||||
Sbjct 38732 TCCCTGGTCAACATAGCGAGCCACGTTGTTAAAAACTCTTAGCATTGGCACCAAACCATT 38791
Query 54247 GGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 54306
|| | ||||| || || |||| | | || | |||||||| || ||
Sbjct 38792 TGAAGTTCCATTAGTTCCACAGATCGAAGTACCTTTAGCACGAATGCAGTGAACGTTTAT 38851
Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366
|| || || || || ||| || || | ||||||| ||| | | | | | || ||
Sbjct 38852 CCCGATTCCACCAGCTGATTTGGATATCATTGCGCATTGTTCGACGGATTTAAATATTCC 38911
Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426
|| || |||| ||| ||| |||| |||||||| |||| ||| | ||| | ||
Sbjct 38912 TTCAATTGAATCAGCCACCATCGTAAGAAGAAAACACGACGACAGTTGCGGCCGATTTGT 38971
Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486
| || || | || || ||||| || || || || || ||||| | |||||
Sbjct 38972 AGCTGCCGCGAAAAGTGTTGGCGAAGCATGGGTGAAATATCGCTCGGAAAGCAAGTTGTA 39031
Query 54487 CGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 54546
||| || | || | || ||||| ||| ||||| | || ||||||||||||||
Sbjct 39032 CGTTTCAACTGCCGCATCGATATCTTCGCCATGTATTCCAATGGCCACACGCATTAACAT 39091
Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606
||||| || | |||| | || || ||||| |||| || || || ||| | ||
Sbjct 39092 ATGCTGTGGGCGTTCAGCAATTTTCCCATTTATCTTCAATAAATATGAACGTTCAAGCGT 39151
Query 54607 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660
|||||| ||||||||||||||| |||||| || || ||||| ||| |||||||
Sbjct 39152 TTTAAATCCAAAATAGTTGTATCCAAAGTCCCGATCATAAATTATAGCTGAGTT 39205
>seq13173
Length=15772
Score = 205 bits (226), Expect = 1e-47
Identities = 473/704 (67%), Gaps = 9/704 (1%)
Strand=Plus/Minus
Query 23969 ATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTAT-AAGTTTAA 24027
||| |||||||| || || ||| ||||| || |||||||| || || |||||||
Sbjct 14610 ATCGGCGACAAATTCAATGTATTCAGACATCAGTTTGCAATTCATGCCAATTAAGTTTA- 14552
Query 24028 CTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATC 24087
| || | ||| | || || || || ||||| || || || |||| || || ||
Sbjct 14551 CGGGCAAAGCGTCTGTGAGGAACTCCTGTTCGATGACTACAGCATCTGAAATGATT--TC 14494
Query 24088 T-TACTGT-TTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 24145
|| || ||| ||| || | | | | ||| | ||||||| || |||||
Sbjct 14493 AATAATGCGTTCACGACTGGGACGTTGAACCAGATGCTGGAACATCAGCACGGCAAAATC 14434
Query 24146 GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 24205
||| |||||||||||||| | |||||| || || || || || || |||||||| ||
Sbjct 14433 GCAATGTAGACCCTCGTCGCGTGAAATTAACTCATTTGAGAAGGTAAGACCGGGCATAAG 14374
Query 24206 GCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTAC 24265
|| ||||| || | |||||| || || || || ||| |||||| || ||||| ||
Sbjct 14373 ACCGCGCTTCTTCAACCAAAAGATTGAAGCGAAGCTGCCACTAAAGAAGATGCCTTCGAC 14314
Query 24266 TGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC--GCTGTCATG-TATCCACTTTTG 24322
|| ||||| || |||| | ||| ||| || ||| || | | | ||||| |
Sbjct 14313 GGCGGCAAAAGCTATAATGCGTTCACCAAAATTGGCTGACTTTGAAGAAATCCAAGCGAG 14254
Query 24323 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 24382
||||| || ||||| ||||| ||||| ||||| || ||||| || |||||||
Sbjct 14253 GGCCCAGTCCGCCTTGCGCTTTACTGCTGGCATAGTCTCAATCGCATTGAAAAGATAGTC 14194
Query 24383 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 24442
|| || | ||| | ||| || || || | | || |||||||||||||| |
Sbjct 14193 GCGTTGATGAGGATCACGTATATAGGTGTCGATAAGTACGCTGTACATTTCCGAATGCAC 14134
Query 24443 GTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTAT 24502
||| || ||||| ||||| || || || ||||| | |||||||| ||||| || ||
Sbjct 14133 GTTCTCCATGGCAATTTGGAAGCCATAAAAACAACGTGCCTCGGTTATCTGCACCTCCTG 14074
Query 24503 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 24562
| ||| |||||| | | |||||| || || || || || || || || || |||||
Sbjct 14073 GCTAAAGCGTTCTACCAGATTTTCGTTGACAATGCCATCTGATGCGGCGAAGAATGCCAA 14014
Query 24563 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 24622
||||| |||||| | || | || || ||||||||| | || || ||
Sbjct 14013 CACATGAGATATAAAGTGACGCTCATTGTCAGTCAGGCGATTCCAATCTGTCATGTCCTT 13954
Query 24623 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666
|| | |||||| ||||| || ||||| || ||||| || ||||
Sbjct 13953 GGACAGATCCACCTCTTCGACCGTCCAGAAAGATGCTTCGGCCT 13910
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593467784016000
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