Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq13173 318 6e-82 seq30232 122 9e-23 seq20705 107 2e-18 >seq13173 Length=15772 Score = 318 bits (352), Expect = 6e-82 Identities = 515/727 (71%), Gaps = 18/727 (2%) Strand=Plus/Plus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 ||||||| || || |||||||| ||||| |||||||| ||||||||||||| || || | Sbjct 13910 AGGCCGAAGCATCTTTCTGGACGGTCGAAGAGGTGGATCTGTCCAAGGACATGACAGATT 13969 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 || | ||| ||| ||||| ||||| || || || || ||| |||| || ||||||| Sbjct 13970 GGAATCGCCTGACTGACAATGAGCGTCACTTTATATCTCATGTGTTGGCATTCTTCGCCG 14029 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-TTTCGCTCAGGAGGTGCAGGTG 116833 | || ||||| |||||||| |||||||| || || ||| || |||||||||||| | Sbjct 14030 CATCAGATGGCATTGTCAACGAAAATCTGGTAGAACGCTTTAGC-CAGGAGGTGCAGATA 14088 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 ||||||| || || || || ||||| || || ||||||||||||||||| ||||||||| Sbjct 14089 ACCGAGGCACGTTGTTTTTATGGCTTCCAAATTGCCATGGAGAACGTGCATTCGGAAATG 14148 Query 116894 TATTCGACCCTCATCGACAC----GTACGTG-CGCTCTTCGGAGGAGAAGCTCCGTTTGT 116948 || || |||||||| |||||| ||| || | | || | | | | Sbjct 14149 TACAGCGTACTTATCGACACCTATATACGTGATCCTCATC-AACGCGA----CTATCTTT 14203 Query 116949 TGAACGCCATCGAGACGATGCCGTGCGTCAAAGAG-AAGGCCGAGTGGGCGCTGCGC-TG 117006 | || || || ||||| ||||| || |||| | ||||| || ||||| || ||| || Sbjct 14204 TCAATGCGATTGAGACTATGCC-AGCAGTAAAGCGCAAGGCGGACTGGGCCCT-CGCTTG 14261 Query 117007 GATCGCCGGCAGAG-AGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 ||| | || || ||| || || || ||| | | || || || |||||||| | Sbjct 14262 GAT-TTCTTCAAAGTCAGCCAATTTTGGTGAACGCATTATAGCTTTTGCCGCCGTCGAAG 14320 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 || |||||||| ||||| ||||| | || |||||| | ||||| ||||| || |||| Sbjct 14321 GCATCTTCTTTAGTGGCAGCTTCGCTTCAATCTTTTGGTTGAAGAAGCGCGGTCTTATGC 14380 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 |||| || || ||| || ||| | || || | ||||||||||| |||||||| |||| Sbjct 14381 CCGGTCTTACCTTCTCAAATGAGTTAATTTCACGCGACGAGGGTCTACATTGCGATTTTG 14440 Query 117186 CCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCG 117245 || || ||||| ||||| |||| || || || || | ||| | | || ||| Sbjct 14441 CCGTGCTGATGTTCCAGCATCTGGTTCAACGTCCCAGTCGTGAACGCATTATTGAAATCA 14500 Query 117246 TCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGC 117305 | | || || || | |||||| ||| |||||||| || || |||| || | Sbjct 14501 TTTCAGATGCTGTAGTCATCGAACAGGAGTTCCTCACAGACGCTTTGCCCGTAAACTTAA 14560 Query 117306 TGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGC 117365 | || | |||||| || |||||| ||||||| || || |||||||| | |||||| Sbjct 14561 TTGGCATGAATTGCAAACTGATGTCTGAATACATTGAATTTGTCGCCGATCGTCTGCTGG 14620 Query 117366 TCGAGCT 117372 | ||||| Sbjct 14621 TAGAGCT 14627 >seq30232 Length=15380 Score = 122 bits (134), Expect = 9e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| |||||||| |||| || || || | Sbjct 15330 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCCTCA 15271 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || |||| ||||| || ||||| ||| | || ||| Sbjct 15270 GATACCATTGAGAATGTTAAGGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 15211 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| ||||| |||||||| |||| ||||| || |||||||||| Sbjct 15210 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 15151 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| |||| ||||| | ||| Sbjct 15150 ATCCAGAAGGAGTCCACTTTGCATTTGGTG 15121 Score = 118 bits (130), Expect = 1e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| |||||||| |||| || || || | Sbjct 15102 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCCTCA 15043 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | ||||| || ||||| ||| | || ||| Sbjct 15042 GATACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGATCAG 14983 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| ||||| |||||||| |||| ||||| | |||||||||| Sbjct 14982 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGACGCACTTTGTCCGACTACAAC 14923 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGCTT 40922 |||||||||||| |||| |||| | ||| | || ||| | || |||| ||| Sbjct 14922 ATCCAGAAGGAGTCCACATTGCACTTGGTGCTCCGTTTGCGCGGTGGCGCCTT 14870 >seq20705 Length=54059 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || |||||||| ||||||||| | || |||||| | | Sbjct 7087 AATGCAGATTTTCGTTAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTCGAACCTTC 7028 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | ||| |||| | || |||| ||||||||||| || || | || || Sbjct 7027 GGATACAATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCA 6968 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| || |||||||| |||| || | ||||| || ||||||||| Sbjct 6967 ACAACGTCTGATCTTTGCTGGCAAACAATTGGAAGATGGTCGCACTCTGTCCGACTACAA 6908 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||| || || ||| | || |||| | ||| | ||| Sbjct 6907 CATTCAAAAAGAGTCTACATTGCACTTGGTGCTCCGC 6871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514998943792000