Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq5260 114 9e-21 seq17074 102 6e-17 >seq5260 Length=19401 Score = 114 bits (126), Expect = 9e-21 Identities = 280/422 (66%), Gaps = 8/422 (2%) Strand=Plus/Minus Query 97031 TAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGT 97090 |||| ||||| | | | ||| | || |||| ||| | || | ||||| | |||| Sbjct 12361 TAAGTTGCTCATTCAATGGATCCACATGGTTCAAATACACATGCGTGTCTCCCATGGTGT 12302 Query 97091 GAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAAT 97150 | | ||| || || || | |||| ||||| |||||||| | || | | | || Sbjct 12301 GCACAAAGTCGCCCGGCTTGAGGCCAGTCACATGAGCGATCATGTAGGTGAGCAACGCAT 12242 Query 97151 AGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGAC 97210 | ||||||||||| ||||| || | ||||| ||||| || |||||||||||||| Sbjct 12241 ACGAGGCAATGTTAAAGGGCACACCCAAACCCATGTCAGCGCTTCGTTGATATAACTGAC 12182 Query 97211 AGGAAAGCTTTCCA------TCACACACATAAAACTGACTCAATACATGACAGGGGGGCA 97264 |||| |||| ||| | ||||||| ||||| || || || || |||| Sbjct 12181 AGGACAGCTCGCCACGATCCTGGGACACATAGAACTGGGCGAAGCAGTGGCAAGGCGGCA 12122 Query 97265 ACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTG 97324 |||||||||||| | ||| | |||||| ||| |||| | || | || ||| | || Sbjct 12121 GCGCCATTTTTGGTATATCAATTGGATTCCAGGCAGACATAATAATCCGTCGATCTGATG 12062 Query 97325 GGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAAT 97384 | || || ||||||| | ||| | ||| | ||||| | ||| | || ||| | Sbjct 12061 GATTGTTGCGTATGGTGTCAATCACCTGACGCAGCTGATCGATGCCCTTGCCTGTATAGT 12002 Query 97385 TGTGCTTAAGACCT-TGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGT 97443 || | | | | | ||||| ||| ||||| || | |||||| || ||||| || ||| Sbjct 12001 CGT-CGTCACAGGTGCCATATTGTGCGCCAAAGTGGCGCCATTGAAAACCATAGACGGGT 11943 Query 97444 CC 97445 || Sbjct 11942 CC 11941 >seq17074 Length=21176 Score = 102 bits (112), Expect = 6e-17 Identities = 304/461 (66%), Gaps = 6/461 (1%) Strand=Plus/Plus Query 97000 TTTAGTGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGA 97059 |||||| | ||||| || | || | ||| | |||||||| | |||| ||||| |||| Sbjct 3951 TTTAGTTTGGGGAAGGGACGAGGCTTGCGCTTCAGCTGCTCCTTCAGAGGATCAACGTGA 4010 Query 97060 TTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTG 97119 || ||| | || | || || ||| | ||| || || || | | | || Sbjct 4011 TTGCGATAGACATGGGTGTCGCCCGTGACGTGCACAAACTCGCCCGGTCGCAGACCCGTC 4070 Query 97120 ACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGT 97179 ||||| |||||||| || || | || | |||| |||||||| || ||||| || || Sbjct 4071 ACATGCGCGATCATGCACGTGAGCAGCGCATAGGATGCAATGTTGAAGGGCACACCCAGA 4130 Query 97180 CCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAAC 97239 ||||||||||| | ||||| | ||| ||||| |||| || | |||||| ||| Sbjct 4131 CCCATATCAGCACTGCGCTGATAGAGCTGGCAGGATAGCTCGCCCTGCGCCACATAGAAC 4190 Query 97240 TGACTCAATACA-TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGC 97298 || | | ||| || || || |||| ||||| | ||| | ||| | |||||| | Sbjct 4191 TG-GGCCAGACAGTGGCACGGCGGCAGTGCCATCTGTGGGATATCCGATGGATTCCACGA 4249 Query 97299 ACACATCAACATTCTTCTATCGGTTGGGTTTGT-GTGTATGGTATTAATTATCTGCTTTA 97357 |||| | ||| | || ||| ||| || | || | ||||||| | || | | | | Sbjct 4250 GGACATGATCATGCGTCGATC-GTTCGGATCGTGGCGTATGGTGTGTATGACGCGTTGCA 4308 Query 97358 ATTGATCAACGCCTTCTCCACCATAATTGT-GCTTAAGACCTTGATATTCTGCTCCAAAA 97416 |||||| || || || || ||| | || ||| || || | || | || ||||| Sbjct 4309 GTTGATCGACTCCCTCGCCGGAATAGTCGTCGCTGCAG-CCGCGGTACTTGGCGCCAAAG 4367 Query 97417 TGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTC 97457 || | ||| || || ||||| || || || ||||| || || Sbjct 4368 TGACGCCACTGAAAGCCATATACCGGCCCCAGGTCGCCCTC 4408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346639456094000