Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq10079 143 5e-29 >seq10079 Length=19992 Score = 143 bits (158), Expect = 5e-29 Identities = 211/296 (71%), Gaps = 2/296 (1%) Strand=Plus/Minus Query 189441 ATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTT 189500 ||||| ||| |||||| | | || ||||| |||| | ||||| ||||||||| | | Sbjct 12959 ATGATGATCTGTGGAACTCTGCGCAGTTGCAGCTGGTAAAGGAAGGCAAAATGCATGGAT 12900 Query 189501 TTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTT 189560 || | |||||||||||||| || ||||| | |||||||| |||| ||||| || Sbjct 12899 TTCTGCGAATGTATTGGGCCAAAAAGATTTTGGAATGGACCGCCTCACCAGAAGAAGCAC 12840 Query 189561 TG-AGTTATAGTATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGA 189619 || |||| || || | | ||| | |||||| | || || ||||||||| || Sbjct 12839 TGGAGTT-TACAATATTGCTAAACGATAAGTACAGCTTGGATGGGCGGGATCCTAATGGC 12781 Query 189620 TACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCG 189679 ||||| ||||| |||||||||||| | || | || || || ||||| ||| || | Sbjct 12780 TACGTGGGTTGCATGTGGTCTATTGGTGGGGTGCATGACCAAGGCTGGAAGGAACGATCT 12721 Query 189680 ATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGT 189735 || |||||||||||| | |||||||| ||| || | | || ||||| ||||| Sbjct 12720 ATCTTTGGAAAGATACGCTATATGAACTATCAGGGGTGCAAACGCAAATTCGATGT 12665 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 189607 GGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTG 189666 ||||||||| || ||||| ||||| |||||||||||| | || | || || || || Sbjct 12595 GGATCCTAATGGCTACGTGGGTTGCATGTGGTCTATTGGTGGGGTGCATGACCAAGGCTG 12536 Query 189667 GAAAGAAAGACCGATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAA 189726 ||| ||| || | || |||||||||||| | |||||||| ||| || | | || || Sbjct 12535 GAAGGAACGATCTATCTTTGGAAAGATACGCTATATGAACTATCAGGGGTGCAAACGCAA 12476 Query 189727 ATTTGATGT 189735 ||| ||||| Sbjct 12475 ATTCGATGT 12467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922802133368000