Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq30232 105 8e-18 seq2037 98.7 1e-15 seq8059 95.1 1e-14 seq21423 93.3 5e-14 seq16981 93.3 5e-14 seq4619 93.3 5e-14 seq21022 91.5 2e-13 seq17205 91.5 2e-13 seq15734 91.5 2e-13 seq200 91.5 2e-13 seq20705 87.8 2e-12 >seq30232 Length=15380 Score = 105 bits (116), Expect = 8e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||||||||| ||| |||||| || || ||||| || | |||||| || | Sbjct 15115 ACGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCC 15174 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| |||||||| || | |||||||| || | || | || ||||| Sbjct 15175 GTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTT 15234 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 || | ||| | || | || | || | | || || | ||||| |||| |||| Sbjct 15235 GT-CTTGAATCTTGGCCTTAACATTCTCAATGGTATCTGAGGGCTCCACTTCGAGAGTGA 15293 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || | ||||| || ||||| ||||| Sbjct 15294 TGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 15330 >seq2037 Length=2420 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | |||||| |||||||||||||||||||||||||||| ||||| ||| Sbjct 981 TTATCTCCCCGACGGGGAATTGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTAACC 922 Query 60122 ACTATACTACCGAGGAT 60138 ||||||||| ||||||| Sbjct 921 ACTATACTATCGAGGAT 905 >seq8059 Length=7765 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 6888 TTTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 6947 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 6948 CTATACTATCGAGGA 6962 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 7524 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 7583 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 7584 TACTATCGAGGA 7595 >seq21423 Length=5018 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 3323 TTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 3264 Query 60123 CTATACTACCGAGGA--TTGAAT 60143 |||||||| |||||| |||||| Sbjct 3263 CTATACTATCGAGGATGTTGAAT 3241 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3873 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 3932 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 3933 ATACTATCGAGGA 3945 >seq16981 Length=8162 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 5031 TTTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 4972 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 4971 ACTATACTATCGAGGA 4956 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 5295 TTTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 5236 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 5235 ACTATACTATCGAGGA 5220 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 5886 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 5945 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 5946 ATACTATCGAGGA 5958 >seq4619 Length=19988 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 9339 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 9398 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 9399 TATACTATCGAGGA 9412 >seq21022 Length=1978 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1299 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1240 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 1239 TACTATCGAGGAT 1227 >seq17205 Length=2043 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 438 TTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 497 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 498 CTATACTATCGAGGA 512 >seq15734 Length=4880 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 333 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 274 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 273 ATACTATCGAGGA 261 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 60077 GGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGG 60136 ||||| |||||| ||||||||||||||||||||| ||||| |||||||||||| ||||| Sbjct 119 GGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTATACTATCGAGG 60 Query 60137 A 60137 | Sbjct 59 A 59 >seq200 Length=40443 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 24486 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 24545 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 24546 TACTATCGAGGAT 24558 >seq20705 Length=54059 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| |||||||| ||| |||||||| ||||| || | |||||| || | || || Sbjct 6877 CACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTC 6936 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 | || || ||||| || || || || || || || | || | | ||| |||||| | Sbjct 6937 CAATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCC-T 6995 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || | || | ||||| | | | || || | ||| || || | |||||||| | Sbjct 6996 GAATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCT 7055 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||||||||| ||||| || || || |||||| Sbjct 7056 TGCCCGTTAGGGTCTTAACGAAAATCTGCATT 7087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571573147976000