Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq30232 105 8e-18
seq2037 98.7 1e-15
seq8059 95.1 1e-14
seq21423 93.3 5e-14
seq16981 93.3 5e-14
seq4619 93.3 5e-14
seq21022 91.5 2e-13
seq17205 91.5 2e-13
seq15734 91.5 2e-13
seq200 91.5 2e-13
seq20705 87.8 2e-12
>seq30232
Length=15380
Score = 105 bits (116), Expect = 8e-18
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | |||||||||||| ||| |||||| || || ||||| || | |||||| || |
Sbjct 15115 ACGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCC 15174
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || |||||||| |||||||| || | |||||||| || | || | || |||||
Sbjct 15175 GTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTT 15234
Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
|| | ||| | || | || | || | | || || | ||||| |||| ||||
Sbjct 15235 GT-CTTGAATCTTGGCCTTAACATTCTCAATGGTATCTGAGGGCTCCACTTCGAGAGTGA 15293
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||| ||||| || | ||||| || ||||| |||||
Sbjct 15294 TGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 15330
>seq2037
Length=2420
Score = 98.7 bits (108), Expect = 1e-15
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
|| ||||| || | |||||| |||||||||||||||||||||||||||| ||||| |||
Sbjct 981 TTATCTCCCCGACGGGGAATTGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTAACC 922
Query 60122 ACTATACTACCGAGGAT 60138
||||||||| |||||||
Sbjct 921 ACTATACTATCGAGGAT 905
>seq8059
Length=7765
Score = 95.1 bits (104), Expect = 1e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
||||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||
Sbjct 6888 TTTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 6947
Query 60123 CTATACTACCGAGGA 60137
|||||||| ||||||
Sbjct 6948 CTATACTATCGAGGA 6962
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 7524 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 7583
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 7584 TACTATCGAGGA 7595
>seq21423
Length=5018
Score = 93.3 bits (102), Expect = 5e-14
Identities = 71/83 (86%), Gaps = 2/83 (2%)
Strand=Plus/Minus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
|| |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||
Sbjct 3323 TTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 3264
Query 60123 CTATACTACCGAGGA--TTGAAT 60143
|||||||| |||||| ||||||
Sbjct 3263 CTATACTATCGAGGATGTTGAAT 3241
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 3873 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 3932
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 3933 ATACTATCGAGGA 3945
>seq16981
Length=8162
Score = 93.3 bits (102), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
||| |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||
Sbjct 5031 TTTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 4972
Query 60122 ACTATACTACCGAGGA 60137
||||||||| ||||||
Sbjct 4971 ACTATACTATCGAGGA 4956
Score = 93.3 bits (102), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
||| |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||
Sbjct 5295 TTTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 5236
Query 60122 ACTATACTACCGAGGA 60137
||||||||| ||||||
Sbjct 5235 ACTATACTATCGAGGA 5220
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 5886 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 5945
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 5946 ATACTATCGAGGA 5958
>seq4619
Length=19988
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||
Sbjct 9339 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 9398
Query 60124 TATACTACCGAGGA 60137
||||||| ||||||
Sbjct 9399 TATACTATCGAGGA 9412
>seq21022
Length=1978
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 1299 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1240
Query 60126 TACTACCGAGGAT 60138
||||| |||||||
Sbjct 1239 TACTATCGAGGAT 1227
>seq17205
Length=2043
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
|| |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||
Sbjct 438 TTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 497
Query 60123 CTATACTACCGAGGA 60137
|||||||| ||||||
Sbjct 498 CTATACTATCGAGGA 512
>seq15734
Length=4880
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 333 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 274
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 273 ATACTATCGAGGA 261
Score = 84.2 bits (92), Expect = 2e-11
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 60077 GGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGG 60136
||||| |||||| ||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct 119 GGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTATACTATCGAGG 60
Query 60137 A 60137
|
Sbjct 59 A 59
>seq200
Length=40443
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 24486 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 24545
Query 60126 TACTACCGAGGAT 60138
||||| |||||||
Sbjct 24546 TACTATCGAGGAT 24558
>seq20705
Length=54059
Score = 87.8 bits (96), Expect = 2e-12
Identities = 148/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
|||||| |||||||| ||| |||||||| ||||| || | |||||| || | || ||
Sbjct 6877 CACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTC 6936
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
| || || ||||| || || || || || || || | || | | ||| |||||| |
Sbjct 6937 CAATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCC-T 6995
Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152
|| | || | ||||| | | | || || | ||| || || | |||||||| |
Sbjct 6996 GAATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCT 7055
Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
|||||||||| ||||| || || || ||||||
Sbjct 7056 TGCCCGTTAGGGTCTTAACGAAAATCTGCATT 7087
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571573147976000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |