Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq30232 107 2e-18
seq20705 93.3 3e-14
>seq30232
Length=15380
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| |||| ||| ||||||||| |||||||||||| ||| ||| |||| |||
Sbjct 15122 ACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 15181
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| ||||| ||||| || || || || | || |||||||| |
Sbjct 15182 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGA 15241
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || |||||| | | | | | || |||||| || | || || ||||||
Sbjct 15242 ATCTTGGCCTTAACATTCTCAATGGTATCTGAGGGCTCCACTTCGAGAGTGATGGTCTTG 15301
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| |||||||| ||||| |||||
Sbjct 15302 CCAGTCAAGGTCTTCACGAAGATCTGCAT 15330
Score = 102 bits (112), Expect = 6e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 45108 CGCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGT 45167
||||||| | ||| | | |||||||||| ||| ||||||||| ||||||||||||
Sbjct 14874 CGCCACCGCGCAAACGGAGCACCAAGTGCAATGTGGACTCCTTCTGGATGTTGTAGTCGG 14933
Query 45168 TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227
|| ||| |||| ||||| || || || ||||| ||||| ||||| || || || |
Sbjct 14934 ACAAAGTGCGTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGG 14993
Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287
| | || |||||||| || || |||||| | | | | | || |||||
Sbjct 14994 GAATGCCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCTGAGGGCTCCA 15053
Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
| || | || || |||||||| |||| ||||| || ||||| |||||
Sbjct 15054 CTTCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 15102
>seq20705
Length=54059
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||||| || ||| || ||||||||||||||| ||| |||| | || |||
Sbjct 6878 ACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTCC 6937
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| |||||| || || || |||| || ||||| || ||||| | ||||| |||||| |
Sbjct 6938 AATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGA 6997
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || || || | | | ||| | || ||||| | ||| || ||||||
Sbjct 6998 ATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTG 7057
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||||| || ||||| || || || |||||
Sbjct 7058 CCCGTTAGGGTCTTAACGAAAATCTGCAT 7086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394910527718200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |