Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq20705 486 2e-132 seq13173 246 3e-60 seq30232 89.7 5e-13 >seq20705 Length=54059 Score = 486 bits (538), Expect = 2e-132 Identities = 1273/1932 (66%), Gaps = 47/1932 (2%) Strand=Plus/Plus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 ||||| || |||||||| || |||||||| || ||||| || || | |||||||| || Sbjct 37338 TTGTCAACAGTAAACTGAATAGCGTTTGCAGCAGGTTTTGTTCGCAAGTAATACATTCCT 37397 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 || || || || |||||| | ||||||||||||||| |||| ||||||||| | ||| Sbjct 37398 GTTTTAAGCCCAGCCTTCCATGAGTAAAAATGTATCGAAGTCAGTTTTCCATAGTTGGGC 37457 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 ||| || | ||| || |||||||| ||||| ||||| || || | ||| || ||| Sbjct 37458 TCTGCCACGTGAATATTAAAGGACTGACTTTGATCTATAAAAGCACCCCTATCAGCAGCC 37517 Query 22286 ATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCT 22345 || ||||| || | || |||||||||||||||||||||| | | || | | Sbjct 37518 ATTTTTATTGTTGATTTAACGGAGATTTCCCATACGGTCTTGTACAAGTCTCGGACGTGT 37577 Query 22346 AACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATC 22405 || || || || || | || | || || | ||| || || || || Sbjct 37578 TGAGGAATAGAATCAATGTTTTGAATAGAACCACGGCTTGATATTATTTGGTTCTTCATG 37637 Query 22406 GTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGA 22465 || | ||| | | | | ||||||||| | || ||| | || || ||||| Sbjct 37638 TCGTCATCCCATAGGTCCAATTCTGTCAAATCTCGTAGTAGGTGATGATTTACTACTTGG 37697 Query 22466 AACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCA 22525 || || || || || || || | |||||| || |||||| |||| ||||| |||||| Sbjct 37698 AATTCACCAGATAACACCCGTCTGGTGTAAATATTAGATGTGTACGGCTCGAAGGATTCA 37757 Query 22526 TTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTT 22585 || || |||| ||| || || || || || || ||||| || || | || | || || Sbjct 37758 TTATTACCCATTATTTGGGCAGTGGATGCTGTAGGCATTGGTGCAATAAGCAAAGAATTG 37817 Query 22586 CTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGC 22645 | | |||||| || |||| | || || | ||||||||| | ||| | || Sbjct 37818 CGAACGCCGTGTTTCTTAATTGACGTTTTAAGTGTATTCCAGTCCCATAAATCTGTTGGA 37877 Query 22646 GTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTAC 22705 || ||| |||||| || || || || | || |||| | ||||||||||| || Sbjct 37878 GTTTTATT---CCACATGTCATACTGTAAAATACCTTTACTCACTGGGCTGCCTTCATAT 37934 Query 22706 GTTTCGTACGGACCATATATCGCG-GCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATA 22764 |||||||| |||| | || | || || ||||| || ||||| | ||| || |||| Sbjct 37935 GTTTCGTAGTAGCCATGT-TCTTGTGCGAGCTCGCAACTTGCCTCGAGCGCTCCAAAATA 37993 Query 22765 TATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATAC- 22823 ||| |||||||| || | || ||| | | || | |||||||||| || |||| Sbjct 37994 TATTGTCTCGAAAATCTGCTGGTTTAGAAGAGATGCCTCATCGCTTTCGTAAGG-ATACC 38052 Query 22824 GCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCA 22883 |||| | | | || || || | |||||||| || || || || || |||| | | Sbjct 38053 GCATTAAGATCAGTGCATCGGCAAAGCCCTGAACACCAATTCCAATAGGACGGTGCCTTA 38112 Query 22884 GATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGT 22943 ||||| ||| ||||| || | |||||| | || ||| ||| || ||||||||| Sbjct 38113 AGTTCGATTTTTTAGCCTCTGGTAGAGGATAAAAGTTGATATCAATTATTTTGTTCAAGT 38172 Query 22944 TTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACG----CCCGAT 22999 || | || ||||| || |||| | ||||||||| | || Sbjct 38173 TTTTTGTAACAATCTTTGTTACATCTTTCAATTTTTTAAAGTCGTATTTTTTTTCGGGAG 38232 Query 23000 TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTG 23059 || |||||| | |||| ||| || || || | ||||| || || | || || | Sbjct 38233 TG----ACAAACATATTGAGGGCTATGGAAGCTAAGTTGCAAACAGCAATTTCATCAGGG 38288 Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119 | | ||||| |||||||||||||||| |||||| || || || || || | || Sbjct 38289 GCGGAATACTCCACAATTTCGGTACATAAATTGCTGCATTTAATGGTTCCAACGTTTTGT 38348 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 || || ||||| ||||| || ||||| ||| | ||||| || || || || || || || Sbjct 38349 TGATTACTTTTGCGATTACAGGAATCTTTGAACAGCATATATGGAGTACCAGTTTCTACT 38408 Query 23180 TGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCT 23239 || ||||| || || || ||||| || || || | || ||| | |||| Sbjct 38409 TGAGACTCAATTATAGCAAACCACAGAGATTGCGCTTTAATTGTTCGATTAGCACGGCCT 38468 Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGT----CAAATTCGGCACCGTAACAGTCGGCCAG 23295 || | || || |||| ||| | || |||| || | || || || | Sbjct 38469 TCCTGTTCATA--TTTG--ACATAGAGTTTATCAAACTCTTCTCCCCAAACATCATGTAA 38524 Query 23296 GCCGGGCGATTGCATCGGACACATGA--GAC---TCCACATTGAGTCATTTTCAACGCGT 23350 ||| || ||| || ||||| | ||| ||| |||| | |||||| || Sbjct 38525 GCCAGGACATTTATGTGGGCACATCAATGACCAATCCTCATT-----AGCTTCAACACGC 38579 Query 23351 CTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCT 23410 ||||||||||||| |||||||||| ||| ||||| || || ||||| || ||||| Sbjct 38580 TTCATAAAAAGATCTGGTATCCATAAAGCATAGAAAAGATCTCGGGCACGATTTTCCTCC 38639 Query 23411 TTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGG 23470 ||||| ||||| ||||| || || ||||| || |||||||| | |||||| || || | Sbjct 38640 TTGCCAGTGTTTTTTTTTAAGTCTAAAAATTCAAACACGTCTGAATGCCAAGGTTCTAAA 38699 Query 23471 TAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTG 23530 |||| ||||| || || || | ||| || ||||| || || || || ||| |||| Sbjct 38700 TAAATTGCAAAGGCACCAGGACGCTTTCCACCTCCCTGGTCAACATAGCGAGCCACGTTG 38759 Query 23531 TTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTC 23590 || | ||||||||||| ||||| | ||| || || | | | | | | || | || Sbjct 38760 TTAAAAACTCTTAGCATTGGCACCAAACCATTTGAAGTTC--CATTAGTTCCACAGA-TC 38816 Query 23591 GA---ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGAT 23647 || |||||| || |||| | |||||||| | || || || || | ||||| ||| Sbjct 38817 GAAGTACCTTTAGCACGAATGCAGTGAACGTTTATCCCGATTCCACCAGCTGATTTGGAT 38876 Query 23648 ATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCG 23707 ||||| |||||||||| | | | | || || || || || | ||| Sbjct 38877 ATCATTGCGCATTGTTCGACGGATTTAAATATTCCTTCAATTGAATCAGCCACCATCGTA 38936 Query 23708 ACCAAGAAACACGAAGACATTTG----CGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGG 23763 | | |||||||| |||| ||| || ||| ||||| |||| ||| ||||| || Sbjct 38937 AGAAGAAAACACGACGACAGTTGCGGCCGATTT----GTAGCTGCCGCGAAAAGTGTTGG 38992 Query 23764 GCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAAT 23823 || || || || |||| | || | | |||||||| || | || ||||| || Sbjct 38993 CGAAGCATGGGTGAAATATCGCTCGGAAAGCAAGTTGTACGTTTCAACTGCCGCATCGAT 39052 Query 23824 GTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGT 23883 || || || ||||| || ||||| || ||||| | ||| | || || | || | | Sbjct 39053 ATCTTCGCCATGTATTCCAATGGCCACACGCATTAACATATGCTGTGGGCGTTCAGCAAT 39112 Query 23884 GACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATA 23943 || || || || || | ||||||||||| | |||||||||||||||||||| || Sbjct 39113 TTTCCCATTTATCTTCAATAAATATGAACGTTCAAGCGTTTTAAATCCAAAATAGTTGTA 39172 Query 23944 GTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGAT 24003 |||||| ||||| | | ||| || || || || || | |||||| || ||| Sbjct 39173 TCCAAAGTCCCGATCATAAATTATAGCTGAGTTTAAGCGATCCGCATTCTTTTTGACGAT 39232 Query 24004 GTTGTAATGAAA 24015 || |||||||| Sbjct 39233 ATTATAATGAAA 39244 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || ||||| || |||||| | || || ||||| || Sbjct 7086 ATGCAGATTTTCGTTAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTCGAACCTTCG 7027 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||||| |||||| | || |||||| || || | || || || || Sbjct 7026 GATACAATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCAA 6967 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || ||||||||||| |||||||| | ||| || ||| || ||| Sbjct 6966 CAACGTCTGATCTTTGCTGGCAAACAATTGGAAGATGGTCGCACTCTGTCCGACTACAAC 6907 Query 31373 ATTCAAAAAGAATCGAC 31389 ||||||||||| || || Sbjct 6906 ATTCAAAAAGAGTCTAC 6890 >seq13173 Length=15772 Score = 246 bits (272), Expect = 3e-60 Identities = 486/712 (68%), Gaps = 24/712 (3%) Strand=Plus/Plus Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||| |||||||| || ||||| |||||||| || || ||||| ||||| ||| |||| Sbjct 13910 AGGCCGAAGCATCTTTCTGGACGGTCGAAGAGGTGGATCTGTCCAAGGACATGACAGATT 13969 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708 || || ||| | || |||| | | ||||| || |||||||| || ||||||| Sbjct 13970 GGAATCGCCTGACTGACAATGAGCGTCACTTTATATCTCATGTGTTGGCATTCTTCGCCG 14029 Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGA 57768 |||| ||||| ||||| ||||| ||| |||| ||| | ||| || || ||||| | | Sbjct 14030 CATCAGATGGCATTGTCAACGAAAATCTGGTAGAACGCTTTAGCCAGGAGGTGCAGATAA 14089 Query 57769 CGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGT 57828 | ||||| | || ||||| || || ||| | ||||| || ||||||||||| ||||||| Sbjct 14090 CCGAGGCACGTTGTTTTTATGGCTTCCAAATTGCCATGGAGAACGTGCATTCGGAAATGT 14149 Query 57829 ATTCGCTACTCATCGA----TACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTC 57884 | |||| ||||| || ||||||| || | ||| || || || ||| Sbjct 14150 ACAGCGTACTTATCGACACCTATATACGTGATCCTCATCAACGCGA---CTA-TCTTTTC 14205 Query 57885 AACGCGATCGAAACAATGCCCGCGATCGCCAAG---AAGGCAGAGTGGTCAATCAAATGG 57941 || ||||| || || ||||| || | ||| ||||| || ||| | || ||| Sbjct 14206 AATGCGATTGAGACTATGCCAGC---AGTAAAGCGCAAGGCGGACTGGGCCCTCGCTTGG 14262 Query 57942 A----TAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGA 57997 | | |||| | |||| || | || | | || || || ||||||||||| Sbjct 14263 ATTTCTTCAAAG----TCAGCCAATTTTGGTGAACGCATTATAGCTTTTGCCGCCGTCGA 14318 Query 57998 AGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057 ||| || |||||| |||||||| || |||| |||||| ||||||| ||||| || || Sbjct 14319 AGGCATCTTCTTTAGTGGCAGCTTCGCTTCAATCTTTTGGTTGAAGAAGCGCGGTCTTAT 14378 Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTT 58117 |||||| || || || || ||||| || || |||||||||||||| ||| ||||| Sbjct 14379 GCCCGGTCTTACCTTCTCAAATGAGTTAATTTCACGCGACGAGGGTCTACATTGCGATTT 14438 Query 58118 TG-CGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACA 58176 || |||| || |||| | || | || | || | || || ||||| | || | Sbjct 14439 TGCCGTG-CTGATGTTCCAGCATCTGGTTCAACGTCCCAGTCGTGAACGCATTATTGAAA 14497 Query 58177 TTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCA 58236 | || | || || || | |||||| | ||||| |||| || || | || || | Sbjct 14498 TCATTTCAGATGCTGTAGTCATCGAACAGGAGTTCCTCACAGACGCTTTGCCCGTAAACT 14557 Query 58237 TGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGA 58288 | | || ||||| | ||||||| | |||||||| ||||| ||||| Sbjct 14558 TAATTGGCATGAATTGCAAACTGATGTCTGAATACATTGAATTTGTCGCCGA 14609 >seq30232 Length=15380 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| || ||||| |||| || || || || Sbjct 15330 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCCTCA 15271 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | || |||||||||||| | || || || ||| Sbjct 15270 GATACCATTGAGAATGTTAAGGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 15211 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || ||||||||||| ||| |||| ||| ||| || ||| || ||| Sbjct 15210 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 15151 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || ||| | ||| |||| || Sbjct 15150 ATCCAGAAGGAGTCCACTTTGCATTTGGTGCT 15119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445575834864000