Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq13173 143 5e-29 seq5260 136 8e-27 seq17074 102 2e-16 >seq13173 Length=15772 Score = 143 bits (158), Expect = 5e-29 Identities = 236/335 (70%), Gaps = 9/335 (3%) Strand=Plus/Plus Query 101901 ATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCAT 101960 |||| | |||| ||| | || ||||| || || ||||| |||||||||||||| | Sbjct 14282 ATTTTGGTGAACGCATTATAGCTTTTGCCGCCGTCGAAGGCATCTTCTTTAGTGGCAGCT 14341 Query 101961 TCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATG 102020 |||| || || || ||| | ||||| | ||| || |||| ||||| |||| ||| |||| Sbjct 14342 TCGCTTCAATCTTTTGGTTGAAGAAGCGCGGTCTTATGCCCGGTCTTACCTTCTCAAATG 14401 Query 102021 AGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGG 102080 |||| ||||| | ||||| ||||| ||| |||| ||||| | ||||| || || Sbjct 14402 AGTTAATTTCACGCGACGAGGGTCTACATTGCGATTTTGC---CGTGCTGATGTTCCAGC 14458 Query 102081 GTTTTGTTGATAC--CCCA-TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCC 102137 | | ||| | || |||| || | ||| | ||| ||||||| | | || || || Sbjct 14459 ATCTGGTTCA-ACGTCCCAGTC--GTGAACGCATTATTGAAATCATTTCAGATGCTGTAG 14515 Query 102138 GAATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCA 102197 || ||||| || || ||||||| | |||| || || ||| | || ||||| |||| Sbjct 14516 TCATCGAACAGGAGTTCCTCACAGACGCTTTGCCCGTAAACTTAATTGGCATGAATTGCA 14575 Query 102198 AGTTGATGAGCCAGTACATTGAATTTGTGGCAGAT 102232 | ||||| | |||||||||||||| || ||| Sbjct 14576 AACTGATGTCTGAATACATTGAATTTGTCGCCGAT 14610 >seq5260 Length=19401 Score = 136 bits (150), Expect = 8e-27 Identities = 266/388 (69%), Gaps = 10/388 (3%) Strand=Plus/Plus Query 35321 AAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGAC-AGTAGAGGGTT 35379 ||||| ||| |||||| | || ||| | |||| |||| | ||||| ||| | || || Sbjct 11857 AAGAACGTACGTATCTGGGATGCAAATAGTACGCGCGAATATCTGGACCAGT-GCGGCTT 11915 Query 35380 ATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGG 35439 | ||| | || | || |||||||||||||| || || || |||||||| || ||||| Sbjct 11916 TAAGGATCGTGCTGTCGGCGATTTGGGACCCGTCTATGGTTTTCAATGGCGCCACTTTGG 11975 Query 35440 TGCTGAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAA 35499 || |||||| |||||| ||| ||||| || ||||| || ||||| || | Sbjct 11976 CGCACAATATGGCACCTGTGACGACGACTATACAGGCAAGGGCATCGATCAGCTGCGTCA 12035 Query 35500 TATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAA 35559 | | | ||| | | | |||||| ||| || |||| |||||| | || ||||| Sbjct 12036 GGTGATTGACACCATACGCAACAATCCATCAGATCGACGGATTATTATGTCTGCCTGGAA 12095 Query 35560 TCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATG 35618 ||| || ||| | | ||||| || || || |||||| || | || || || |||| Sbjct 12096 TCCAATTGATATACCAAAAATGGCGCTGCCGCCTTGCCAC-TGCTTCGCCCAGTTCTATG 12154 Query 35619 T------GGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGT 35672 | || | ||| || |||| || ||||| ||||| ||||||| || | || | Sbjct 12155 TGTCCCAGGATCGTGGCGAGCTGTCCTGTCAGTTATATCAACGAAGCGCTGACATGGGTT 12214 Query 35673 TGGGCGTGCCCTTCAATATTGCATCATA 35700 |||| |||||||| || ||||| || || Sbjct 12215 TGGGTGTGCCCTTTAACATTGCCTCGTA 12242 >seq17074 Length=21176 Score = 102 bits (112), Expect = 2e-16 Identities = 355/541 (66%), Gaps = 16/541 (3%) Strand=Plus/Minus Query 35223 TTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACT-CTCGTGG 35281 ||||| | ||||| |||||| | |||||| | | || || || || || ||| ||| Sbjct 4578 TTCCACTGCTCACCACCAAGCGCGTCTTCTGGCGCGCTGTCGTTGAGGAGCTGCTC-TGG 4520 Query 35282 TTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAG--AAGAAGATACACATCTGGA 35339 || || ||||| || || ||||| | || || | ||||| ||||| |||||| Sbjct 4519 TTTATACACGGCAAGACGGATGCCAAGCTACTG--CAGGCAAAGAACATACATATCTGGG 4462 Query 35340 ACGCTAATGGGTCGCGGGAATTTTTGGA-CAGTAGAGGGTTATACG-ATAGAGCAGAGGG 35397 | | ||| | || || ||| | || | || |||| |||| || | | ||||| Sbjct 4461 ATGGGAATAGCAATCGTGAGTTTCTCGATCTGTGC--GGTTTTACGGATCGCGTCGAGGG 4404 Query 35398 AGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTG 35457 || |||| || ||||| || || || |||||||| ||||| || | || ||| Sbjct 4403 CGACCTGGGGCCGGTATATGGCTTTCAGTGGCGTCACTTTGGCGCCAAGTACCGCGGCTG 4344 Query 35458 TTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATA--TACTAAAGACCCTG 35515 ||| ||| | || |||| | |||||| || ||| | || | ||| | Sbjct 4343 CAGCGACGACTATTCCGGCGAGGGAGTCGATCAACTG--CAACGCGTCATACACACCATA 4286 Query 35516 AGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCAC 35575 | | |||| | ||| || | ||||| ||| | | |||||||| |||| | | Sbjct 4285 CGCCACGATCCGAACGATCGACGCATGATCATGTCCTCGTGGAATCCATCGGATATCCCA 4226 Query 35576 CTTATGGCTCTTCCTCCATGCCACATGACTG-CTCAATTTTATGTGGCTAATGGAGAATT 35634 | ||||| || || || |||||| || ||| | || || |||||||| | || || | Sbjct 4225 CAGATGGCACTGCCGCCGTGCCAC-TGTCTGGCCCAGTTCTATGTGGCGCAGGGCGAGCT 4167 Query 35635 GTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 || |||||| | |||||||| || | ||| | || |||| ||||||||||| ||||| Sbjct 4166 ATCCTGCCAGCTCTATCAGCGCAGTGCTGATATGGGTCTGGGTGTGCCCTTCAACATTGC 4107 Query 35695 ATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTT 35754 ||| || | || || || |||| || | || |||||| |||||| ||||| Sbjct 4106 ATCCTATGCGCTGCTCACGTGCATGATCGCGCATGTGACGGGTCTGCGACCGGGCGAGTT 4047 Query 35755 T 35755 | Sbjct 4046 T 4046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989150376661000