Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq13173 143 5e-29
seq5260 136 8e-27
seq17074 102 2e-16
>seq13173
Length=15772
Score = 143 bits (158), Expect = 5e-29
Identities = 236/335 (70%), Gaps = 9/335 (3%)
Strand=Plus/Plus
Query 101901 ATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCAT 101960
|||| | |||| ||| | || ||||| || || ||||| |||||||||||||| |
Sbjct 14282 ATTTTGGTGAACGCATTATAGCTTTTGCCGCCGTCGAAGGCATCTTCTTTAGTGGCAGCT 14341
Query 101961 TCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATG 102020
|||| || || || ||| | ||||| | ||| || |||| ||||| |||| ||| ||||
Sbjct 14342 TCGCTTCAATCTTTTGGTTGAAGAAGCGCGGTCTTATGCCCGGTCTTACCTTCTCAAATG 14401
Query 102021 AGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGG 102080
|||| ||||| | ||||| ||||| ||| |||| ||||| | ||||| || ||
Sbjct 14402 AGTTAATTTCACGCGACGAGGGTCTACATTGCGATTTTGC---CGTGCTGATGTTCCAGC 14458
Query 102081 GTTTTGTTGATAC--CCCA-TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCC 102137
| | ||| | || |||| || | ||| | ||| ||||||| | | || || ||
Sbjct 14459 ATCTGGTTCA-ACGTCCCAGTC--GTGAACGCATTATTGAAATCATTTCAGATGCTGTAG 14515
Query 102138 GAATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCA 102197
|| ||||| || || ||||||| | |||| || || ||| | || ||||| ||||
Sbjct 14516 TCATCGAACAGGAGTTCCTCACAGACGCTTTGCCCGTAAACTTAATTGGCATGAATTGCA 14575
Query 102198 AGTTGATGAGCCAGTACATTGAATTTGTGGCAGAT 102232
| ||||| | |||||||||||||| || |||
Sbjct 14576 AACTGATGTCTGAATACATTGAATTTGTCGCCGAT 14610
>seq5260
Length=19401
Score = 136 bits (150), Expect = 8e-27
Identities = 266/388 (69%), Gaps = 10/388 (3%)
Strand=Plus/Plus
Query 35321 AAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGAC-AGTAGAGGGTT 35379
||||| ||| |||||| | || ||| | |||| |||| | ||||| ||| | || ||
Sbjct 11857 AAGAACGTACGTATCTGGGATGCAAATAGTACGCGCGAATATCTGGACCAGT-GCGGCTT 11915
Query 35380 ATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGG 35439
| ||| | || | || |||||||||||||| || || || |||||||| || |||||
Sbjct 11916 TAAGGATCGTGCTGTCGGCGATTTGGGACCCGTCTATGGTTTTCAATGGCGCCACTTTGG 11975
Query 35440 TGCTGAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAA 35499
|| |||||| |||||| ||| ||||| || ||||| || ||||| || |
Sbjct 11976 CGCACAATATGGCACCTGTGACGACGACTATACAGGCAAGGGCATCGATCAGCTGCGTCA 12035
Query 35500 TATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAA 35559
| | | ||| | | | |||||| ||| || |||| |||||| | || |||||
Sbjct 12036 GGTGATTGACACCATACGCAACAATCCATCAGATCGACGGATTATTATGTCTGCCTGGAA 12095
Query 35560 TCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATG 35618
||| || ||| | | ||||| || || || |||||| || | || || || ||||
Sbjct 12096 TCCAATTGATATACCAAAAATGGCGCTGCCGCCTTGCCAC-TGCTTCGCCCAGTTCTATG 12154
Query 35619 T------GGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGT 35672
| || | ||| || |||| || ||||| ||||| ||||||| || | || |
Sbjct 12155 TGTCCCAGGATCGTGGCGAGCTGTCCTGTCAGTTATATCAACGAAGCGCTGACATGGGTT 12214
Query 35673 TGGGCGTGCCCTTCAATATTGCATCATA 35700
|||| |||||||| || ||||| || ||
Sbjct 12215 TGGGTGTGCCCTTTAACATTGCCTCGTA 12242
>seq17074
Length=21176
Score = 102 bits (112), Expect = 2e-16
Identities = 355/541 (66%), Gaps = 16/541 (3%)
Strand=Plus/Minus
Query 35223 TTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACT-CTCGTGG 35281
||||| | ||||| |||||| | |||||| | | || || || || || ||| |||
Sbjct 4578 TTCCACTGCTCACCACCAAGCGCGTCTTCTGGCGCGCTGTCGTTGAGGAGCTGCTC-TGG 4520
Query 35282 TTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAG--AAGAAGATACACATCTGGA 35339
|| || ||||| || || ||||| | || || | ||||| ||||| ||||||
Sbjct 4519 TTTATACACGGCAAGACGGATGCCAAGCTACTG--CAGGCAAAGAACATACATATCTGGG 4462
Query 35340 ACGCTAATGGGTCGCGGGAATTTTTGGA-CAGTAGAGGGTTATACG-ATAGAGCAGAGGG 35397
| | ||| | || || ||| | || | || |||| |||| || | | |||||
Sbjct 4461 ATGGGAATAGCAATCGTGAGTTTCTCGATCTGTGC--GGTTTTACGGATCGCGTCGAGGG 4404
Query 35398 AGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTG 35457
|| |||| || ||||| || || || |||||||| ||||| || | || |||
Sbjct 4403 CGACCTGGGGCCGGTATATGGCTTTCAGTGGCGTCACTTTGGCGCCAAGTACCGCGGCTG 4344
Query 35458 TTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATA--TACTAAAGACCCTG 35515
||| ||| | || |||| | |||||| || ||| | || | ||| |
Sbjct 4343 CAGCGACGACTATTCCGGCGAGGGAGTCGATCAACTG--CAACGCGTCATACACACCATA 4286
Query 35516 AGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCAC 35575
| | |||| | ||| || | ||||| ||| | | |||||||| |||| | |
Sbjct 4285 CGCCACGATCCGAACGATCGACGCATGATCATGTCCTCGTGGAATCCATCGGATATCCCA 4226
Query 35576 CTTATGGCTCTTCCTCCATGCCACATGACTG-CTCAATTTTATGTGGCTAATGGAGAATT 35634
| ||||| || || || |||||| || ||| | || || |||||||| | || || |
Sbjct 4225 CAGATGGCACTGCCGCCGTGCCAC-TGTCTGGCCCAGTTCTATGTGGCGCAGGGCGAGCT 4167
Query 35635 GTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694
|| |||||| | |||||||| || | ||| | || |||| ||||||||||| |||||
Sbjct 4166 ATCCTGCCAGCTCTATCAGCGCAGTGCTGATATGGGTCTGGGTGTGCCCTTCAACATTGC 4107
Query 35695 ATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTT 35754
||| || | || || || |||| || | || |||||| |||||| |||||
Sbjct 4106 ATCCTATGCGCTGCTCACGTGCATGATCGCGCATGTGACGGGTCTGCGACCGGGCGAGTT 4047
Query 35755 T 35755
|
Sbjct 4046 T 4046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989150376661000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |