Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq20705 407 2e-108 seq13173 226 4e-54 >seq20705 Length=54059 Score = 407 bits (450), Expect = 2e-108 Identities = 1218/1855 (66%), Gaps = 40/1855 (2%) Strand=Plus/Plus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAA 62125 || ||||| || || | || |||||||| ||||| || || || || |||| |||||| Sbjct 37368 GCAGGTTTTGTTCGCAAGTAATACATTCCTGTTTTAAGCCC-AGCCTTCCATGAGTAAAA 37426 Query 62126 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 62185 ||| || || ||||| ||| | || ||||| | || ||||| | || ||||| Sbjct 37427 ATGTATCGAAGTCAGTTTTCCATAGTTGGGCTCTGCCACGTGAATATTAAAGGACTGACT 37486 Query 62186 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTC 62245 |||||| || || || ||||| || |||||||||||||| | | || | ||||| Sbjct 37487 TTGATCTATAAAAGCACCCCTATCAGCAGCCATTTTTATTGTTGATTTAACGGAGATTTC 37546 Query 62246 CCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATGG 62301 ||| | || || || || || | | | || |||| | | || ||||| | Sbjct 37547 CCATACGGTCTTGTACAAGTCTCGGACG-TGTTGAGGAATAGAATCAATGTTTTGAATAG 37605 Query 62302 ATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62361 | |||| | || || ||||| || || |||| ||||| | || || | Sbjct 37606 AACCACGGCTTGATATTATTTGGTTCTTCATGTCGTCATCCCATAGGTCCAATTCTGTCA 37665 Query 62362 AAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGT 62421 || ||| || || || | || |||||||||||||| ||||| || || | | |||| Sbjct 37666 AATCTCGTAGTAGGTGATGATTTACTACTTGGAATTCACCAGATAACACCCGTCTGGTGT 37725 Query 62422 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62481 |||||||| || ||||| || | || |||||||| |||| ||||| ||||| |||| Sbjct 37726 AAATATTAGATGTGTACGGCTCGAAGGATTCATTATTACCCATTATTTGGGCAGTGGATG 37785 Query 62482 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 62541 | || ||||| ||||| | | ||| ||| | || |||| | |||| | || | || Sbjct 37786 CTGTAGGCATTGGTGCAATAAGCAAAGAATTGCGAACGCCGTGT-TTCTTAATTGACGTT 37844 Query 62542 TTAGATGT-TCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGA 62600 ||| ||| | ||| | ||| | ||| | || | ||| |||| | Sbjct 37845 TTAAGTGTATTCCAGTCCCATAAATCTGTTGGAGTTTTATTCCACATGTCATACTGTAAA 37904 Query 62601 ATACCGTTACTGGCGTACGAT-CCTACATATGTATCATA-TGGTCCT-TCCTTCTCAGCT 62657 ||||| ||||| | | | | ||| ||||||| || || | | | | | ||| | || Sbjct 37905 ATACCTTTACTCAC-TGGGCTGCCTTCATATGTTTCGTAGTAGCCATGTTCTTGT--GCG 37961 Query 62658 AGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGA 62717 || | ||||| ||||| | || || |||| || || || || |||| || |||||| Sbjct 37962 AGCTCGCAACTTGCCTCGAGCGCTCCAAAATATATTGTCTCGAAAATCTGCTGGTTTAGA 38021 Query 62718 TCTTGTGCTTCCGGGCTATCAAATGGATAAT---TTAAGAGAATAAACGCGTCCGCTAAT 62774 ||| || ||| || | ||||| |||||| | | || || || || Sbjct 38022 AGAGATGCCTCATCGCTTTCGTAAGGATACCGCATTAAGA---TCAGTGCATCGGCAAAG 38078 Query 62775 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62834 || ||||||||||| || ||||| | || || || || ||| ||| ||||| | | Sbjct 38079 CCCTGAACACCAATTCCAATAGGACGGTGCCTTAAGTTCGATTTTTTAGCCTCTGGTAGA 38138 Query 62835 GGATAATAATTAATATCTATAATTTTATTGA-GATTTCTG--ACAATTACTTTGACCACA 62891 |||||| | || ||||| || ||||| || | | ||| || ||||| ||||| ||| Sbjct 38139 GGATAAAAGTTGATATCAATTATTTTGTTCAAGTTTTTTGTAACAAT--CTTTGTT-ACA 38195 Query 62892 TCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACA 62948 || |||| ||| ||| || || || | |||||||| || | || | Sbjct 38196 TCTTTCAATTTTTTAAAGTCGTATTTTTTTTCGGGAGTGACAAACATATTGAGGGCTATG 38255 Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 || || | || || || || | |||| || | | ||| | | || || || || Sbjct 38256 GAAGCTAAGTTGCAAACAGCAATTTCATCAGGGGCGGAATACTCCACAATTTCGGTACAT 38315 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 | ||| || || || || ||||| | |||||||||||||| || ||||| | ||| Sbjct 38316 AAATTGCTGCATTTAATGGTTCCAACGTTTTGTTGATTACTTTTGCGATTACAGGAATCT 38375 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63128 || | || || |||||||||||||||| | ||||| || || || || ||| | Sbjct 38376 TTGAACAGCATATATGGAGTACCAGTTTCTACTTGAGACTCAATTATAGCAAACCACAGA 38435 Query 63129 ACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCG 63187 | | || || ||| | |||| | | |||| || || | ||| ||| | | Sbjct 38436 GATTGCGCTTTAATTGTTCGATTAGCACGGCCTTCCTGTT-CATATTTGACATAGAGTTT 38494 Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 || ||||| ||||||||||||| | || | |||||||| || || |||||||| || Sbjct 38495 ATCAAACTCTTCTCCCCAAACATCATGTAAGCCAGGACATTTATGTGGGCACATCAATGA 38554 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63306 ||| || | | | | | || || |||||||| ||||| || ||||| | ||| ||| | Sbjct 38555 CCAATCCTCATTAGCTTCAACACGCTTCATAAAAAGATCTGGTATCCATAAAGC-ATAGA 38613 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63366 | ||||||| | | || |||||| || || || || ||||| | || | || | | Sbjct 38614 AAAGATCTCGGGCACGATTTTCCTCCTTGCCAGTGTTTTTTTTTAAGTCTAAAAATTCAA 38673 Query 63367 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63426 | || |||||||| ||||| || || || || | | ||||| || || |||| Sbjct 38674 ACACGTCTGAATGCCAAGGTTCTAAATAAATTGCAAAGGCACCAGGACGCTTTCCACCTC 38733 Query 63427 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63486 |||| || | || | ||| ||| ||| ||||||| | |||||| | | ||| |||| Sbjct 38734 CCTGGTCAACATAGCGAGCCACGTTGTTAAAAACTCTTAGCATTGGCACCAAACCATTTG 38793 Query 63487 ATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGAC 63546 | | ||||| || || |||| | || | |||||||| || || | Sbjct 38794 AAGTTCCATTAGTTCCACAGATCGAAGTACCTTTAGCACGAATGCAGTGAACGTTTATCC 38853 Query 63547 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTT 63606 | ||||| || || ||| || || | ||||||| ||| | | | | | || |||| Sbjct 38854 CGATTCCACCAGCTGATTTGGATATCATTGCGCATTGTTCGACGGATTTAAATATTCCTT 38913 Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA---GTAG 63663 | || |||| | | ||| |||| |||||||| |||| ||| | ||| |||| Sbjct 38914 CAATTGAATCAGCCACCATCGTAAGAAGAAAACACGACGACAGTTGCGGCCGATTTGTAG 38973 Query 63664 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63723 | |||| || | || || ||||| || || || || || ||||| | |||| Sbjct 38974 CTGCCGCGAAAAGT---GTTGGCGAAGCATGGGTGAAATATCGCTCGGAAAGCAAGTTGT 39030 Query 63724 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63783 |||| |||| || | || ||||| ||| ||||| | || ||||||||||||| Sbjct 39031 ACGTTTCAACTGCCGCATCGATATCTTCGCCATGTATTCCAATGGCCACACGCATTAACA 39090 Query 63784 TGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63843 | ||||| || | |||| ||||||| ||||| ||||| || || || ||| | | Sbjct 39091 TATGCTGTGGGCGTTCAGCAATTTTCCCATTTATCTTCAATAAATATGAACGTTCAAGCG 39150 Query 63844 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 63898 ||||||| ||||||||||||||| |||||| || || ||||| ||| | || || Sbjct 39151 TTTTAAATCCAAAATAGTTGTATCCAAAGTCCCGATCATAAATTATAGCTGAGTT 39205 >seq13173 Length=15772 Score = 226 bits (250), Expect = 4e-54 Identities = 472/701 (67%), Gaps = 3/701 (0%) Strand=Plus/Minus Query 33416 ATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAAC 33475 ||| ||||| ||||| || ||| ||||| || |||||||| || || | || || Sbjct 14610 ATCGGCGACAAATTCAATGTATTCAGACATCAGTTTGCAATTCATGCCAATTAAGTTTAC 14551 Query 33476 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCT 33535 || | ||| | || || || || ||||| ||| ||| |||| || || || | Sbjct 14550 GGGCAAAGCGTCTGTGAGGAACTCCTGTTCGATGACTACAGCATCTGAAATGATTTCAAT 14491 Query 33536 AACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCA 33595 || | ||| ||| || | || | | ||| | ||||||| || |||||||| Sbjct 14490 AATGCGTTCACGACTGGGACGTTGAACCAGATGCTGGAACATCAGCACGGCAAAATCGCA 14431 Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 || ||||||||||| | |||||| || || || || || || |||||||| || || Sbjct 14430 ATGTAGACCCTCGTCGCGTGAAATTAACTCATTTGAGAAGGTAAGACCGGGCATAAGACC 14371 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 ||||| || | |||||| || |||||||| || ||||||||| ||||| || || Sbjct 14370 GCGCTTCTTCAACCAAAAGATTGAAGCGAAGCTGCCACTAAAGAAGATGCCTTCGACGGC 14311 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCATGTA-TCCACTTTTGAGC 33772 ||||| || |||| | || ||| || ||| || | | | | |||| | || Sbjct 14310 GGCAAAAGCTATAATGCGTTCACCAAAATTGGCTGACTTTGAAGAAATCCAAGCGAGGGC 14251 Query 33773 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33832 ||| || ||||| ||||| ||||| || || || ||||| || ||||||| Sbjct 14250 CCAGTCCGCCTTGCGCTTTACTGCTGGCATAGTCTCAATCGCATTGAAAAGATAGTCGCG 14191 Query 33833 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 || || | ||| | ||| || ||||| | | || |||||||||||||| | ||| Sbjct 14190 TTGATGAGGATCACGTATATAGGTGTCGATAAGTACGCTGTACATTTCCGAATGCACGTT 14131 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 33952 || ||||| || || || || || ||||| | |||||||| |||||||| || | Sbjct 14130 CTCCATGGCAATTTGGAAGCCATAAAAACAACGTGCCTCGGTTATCTGCACCTCCTGGCT 14071 Query 33953 AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATAC 34012 ||| |||||| | | |||||| || || || ||||| || || || || ||||| || Sbjct 14070 AAAGCGTTCTACCAGATTTTCGTTGACAATGCCATCTGATGCGGCGAAGAATGCCAACAC 14011 Query 34013 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 34072 ||| |||||| | || | || || ||||||||| | || || || || Sbjct 14010 ATGAGATATAAAGTGACGCTCATTGTCAGTCAGGCGATTCCAATCTGTCATGTCCTTGGA 13951 Query 34073 TATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | |||||| ||||| || ||||| || ||||| || |||| Sbjct 13950 CAGATCCACCTCTTCGACCGTCCAGAAAGATGCTTCGGCCT 13910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629548352976000