Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq20705 374 8e-99 >seq20705 Length=54059 Score = 374 bits (414), Expect = 8e-99 Identities = 1195/1839 (65%), Gaps = 32/1839 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| || || | |||| |||| || | |||||||| || ||||||||||| ||| Sbjct 37341 TCAACAGTAAACTGAATAGCGTTTGCAGCAGGTTTTGTTCGCAAGTAATACATTCCTGTT 37400 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || ||||| ||||| ||||||||| || ||||||||| | || | || | Sbjct 37401 TTAAGCCCAGCCTTCCATGAGTAAAAATGTATCGAAGTCAGTTTTCCATAGTTGGGCTCT 37460 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | | || | | || ||||||||||||||||| ||||| || || || |||||| Sbjct 37461 GCCACGTGAATATTAAAGGACTGACTTTGATCTATAAAAGCACCCCTATCAGCAGCCATT 37520 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | || | |||| || || ||||| || || || || | | | | | | Sbjct 37521 TTTATTGTTGATTTAACGGAGATTTCCCATACGGTCTTGTACAAGTCTCGGACGTGTTGA 37580 Query 37030 GGTA---AATCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086 || | |||| | | ||||||||||||| | | | ||| ||||| ||||| Sbjct 37581 GGAATAGAATCAATGTTTTGAATAGAACCACGGCTTGATATTATTTGGTTCTTCATGTCG 37640 Query 37087 TTATTCCACATATTTCTACTTATT--AGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144 | || ||| || || | || | | |||| | |||||| ||||||| || || | Sbjct 37641 TCATCCCA--TAGGTCCAATTCTGTCAAATCTCGTAGTAGGTGATGATTTACTACTTGGA 37698 Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204 | || |||||||| || | ||| || || ||||| || || || || | ||| |||| Sbjct 37699 ATTCACCAGATAACACCCGTCTGGTGTAAATATTAGATGTGTACGGCTCGAAGGATTCAT 37758 Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264 |||||| | |||||| | || ||||| |||||||||||||| || || | ||| | Sbjct 37759 TATTACCCATTATTTGGGCAGTGGATGCTGTAGGCATTGGTGCAATAAGCAAAGAATTGC 37818 Query 37265 TCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGT 37324 | || ||| | |||||| | |||| ||| |||||| ||||||||||||||||| Sbjct 37819 GAACGCCGTGTTTCTTAATTGACGTTTTAAGTGTATTCCAGTCCCATAAATCTGTTGGAG 37878 Query 37325 TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCT 37384 | || |||||| ||||| |||| ||||||||||||| |||| | | |||||| | Sbjct 37879 TTTTATTCCACATGTCATACTGTAAAATACCTTTACTCACTGGGCTGCCTTCATATGTTT 37938 Query 37385 CATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTG 37444 | || || | || || || |||||||| | || || || || ||||||||| Sbjct 37939 CGTAGTAGCCATGTTCTTGTGCGAGCTCGCAACTTGCCTCGAGCGCTCCAAAATATATTG 37998 Query 37445 TTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATA 37504 | |||||||| || |||| | ||| || ||||| ||| | | ||| | || || Sbjct 37999 TCTCGAAAATCTGCTGGTTTAGAAGAGATGCCTCATCGCTTTCGTAAGGATACCGCATTA 38058 Query 37505 ATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTA--TT 37562 | || | |||| || || ||||||||||| || || || || | || |||| || Sbjct 38059 AGATCAGTGCATCGGCAAAGCCCTGAACACCAATTCCAATAGGAC--GGTGCCTTAAGTT 38116 Query 37563 AGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTT 37622 ||| | | ||| | |||||| | |||||||| |||||||| || | ||||| Sbjct 38117 CGATTTTTTAGCCTCTGGTAGAGGATAAAAGTTGATATCAATTATTTTGTTCAAGTTTTT 38176 Query 37623 AACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATAAATACGTTATT----ATT 37676 | || || || | | |||| || | || | || | || || | | Sbjct 38177 TGTAACAATCTTTGTTACATCTTTCAATTTTTTAAAGTCGTATTT---TTTTTCGGGAGT 38233 Query 37677 AACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACT 37736 ||||| || | | | || || ||| || || ||||||| |||||| | Sbjct 38234 GACAAACATATTGAGGGCTATGGAAGCTAAGTTGCAAACAGCAATTTCATCAGGGGCGGA 38293 Query 37737 AAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATT 37796 | | | | ||| || ||||| | ||| || || |||| ||||| | || |||||| Sbjct 38294 ATACTCCACAATTTCGGTACATAAATTGCTGCATTTAATGGTTCCAACGTTTTGTTGATT 38353 Query 37797 GGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGC 37856 ||| |||||| |||||||| | || ||||| || || || ||||| ||||| Sbjct 38354 ACTTTTGCGATTACAGGAATCTTTGAACAGCATATATGGAGTACCAGTTTCTACTTGAGA 38413 Query 37857 CTCGATAATAGATTTCCATAAACTTCTTGCTTTAA-CGATCGCTT-TAAtttttttCTTT 37914 ||| || |||| ||| | | | ||||||| | ||| || | ||| | Sbjct 38414 CTCAATTATAGCAAACCACAGAGATTGCGCTTTAATTGTTCGATTAGCACGGCCTTCCT- 38472 Query 37915 GTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGA 37974 ||| |||| | ||| | ||| | ||| || | ||||| ||||| ||| || ||| Sbjct 38473 -GTTCATATTTGACATAGAGTTTATCAAACTCTTCTCCCCAAACATCATGTAAGCCAGGA 38531 Query 37975 CATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAA 38034 |||| ||| ||||| | ||||| || |||| ||| || || | |||||| | | Sbjct 38532 CATTTATGTGGGCACATCAATGACCAATCCTCATTAGCTTCAACACGCTTCATAAAAAGA 38591 Query 38035 TCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTC 38094 || |||| |||||| ||| || | |||| || | || ||| || || || || Sbjct 38592 TCTGGTATCCATAAAGCATAGAAAAGATCTCGGGCACGATTTTCCTCCTTGCCAGTGTTT 38651 Query 38095 TTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATT 38154 ||| ||||| || ||| || || | || | ||||| ||||||| |||||| | | Sbjct 38652 TTTTTTAAGTCTAAAAATTCAAACACGTCTGAATGCCAAGGTTCTAAATAAATTGCAAAG 38711 Query 38155 GCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTT 38214 || || || | || |||||||||| | || ||| | | | ||| ||| | | |||| Sbjct 38712 GCACCAGGACGCTTTCCACCTCCCTGGTCAACATAGCGAGCCACGTTGTTAAAAACTCTT 38771 Query 38215 AACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCT 38274 | ||| || || | |||||| || | || || | || | || ||||||| ||||| Sbjct 38772 AGCATTGGCACCAAACCATTTGAAGTTCCATTAGTTCCACAGATCGAAGTACCTTTAGCA 38831 Query 38275 CGTATATTACTTATCGACAAT-CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTG 38333 || || | | | || || || |||||||| || ||| ||||| | |||||||| Sbjct 38832 CGAAT-GCAGTGAACGTTTATCCCGATTCCACCAGCTGATTTGGATATCATTGCGCATTG 38890 Query 38334 TTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACT 38393 || | | | |||||| ||||| || ||| || || | || | |||||| Sbjct 38891 TTCGACGGATTTAAATATTCCTTCAATTGAATCAGCCACCATCGTAAGAAGAAAACACGA 38950 Query 38394 AGACATTTGAGGC---AATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAA 38450 |||| ||| ||| || || | | ||| || | ||| || || ||||| |||| Sbjct 38951 CGACAGTTGCGGCCGATTTGTAGCTGCCGCG---AAAAGTGTTGGCGAAGCATGGGTGAA 39007 Query 38451 CCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAAT 38510 || || || | | || || ||||| | | | |||| ||||| |||| || || Sbjct 39008 ATATCGCTCGGAAAGCAAGTTGTACGTTTCAACTGCCGCATCGATATCTTCGCCATGTAT 39067 Query 38511 ACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTT 38570 || | | || | ||||| |||||| ||||| | ||| ||||| ||| || Sbjct 39068 TCCAATGGCCACACGCATTAACATATGCTGTGGGCGTTCAGCAATTTTCCCATTTATCTT 39127 Query 38571 AAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATA 38609 | || ||| || ||| | ||||| | ||||||||| Sbjct 39128 CAATAAATATGAACGTTCAAGCGTTTTAAATCCAAAATA 39166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468324505648000