Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq17074 158 1e-33 seq5260 105 6e-18 >seq17074 Length=21176 Score = 158 bits (174), Expect = 1e-33 Identities = 382/573 (67%), Gaps = 8/573 (1%) Strand=Plus/Plus Query 20779 AAACGGCCATCTCCATCTCTATGTGGGGATGGGGGTCGTAGCCCTCGAGACT--CAGATC 20836 |||||||||| ||||| | || | ||||| || | ||| |||||| | || | Sbjct 3850 AAACGGCCATTTCCATGTGGATCTTGGGATATGGCTGATAG---TCGAGAATTTCAAAGT 3906 Query 20837 CG-CGC-GCGTAAAGTCCTCCAGACGCGCCACCTTTCTCAAAATCTTCAGCCGCGGAAAC 20894 || || ||| ||| ||||| | | | ||||| | | ||| || || || || Sbjct 3907 CGTCGAAGCGAAAA-TCCTCTATATTCTGCACCTGCCGCCGAATGTTTAGTTTGGGGAAG 3965 Query 20895 GGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGG 20954 ||||| || | | | |||||| | ||| ||||||||||| ||| || || ||| Sbjct 3966 GGACGAGGCTTGCGCTTCAGCTGCTCCTTCAGAGGATCAACGTGATTGCGATAGACATGG 4025 Query 20955 GCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGA 21014 | ||| ||| | ||||||||| || ||||| ||| ||||| || || ||||||| Sbjct 4026 GTGTCGCCCGTGACGTGCACAAACTCGCCCGGTCGCAGACCCGTCACATGCGCGATCATG 4085 Query 21015 TACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGAC 21074 |||| || || || ||| || ||||| || || || || || ||||| || || Sbjct 4086 CACGTGAGCAGCGCATAGGATGCAATGTTGAAGGGCACACCCAGACCCATATCAGCACTG 4145 Query 21075 CTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGA 21134 | ||| || ||||||||||| ||||| ||| | ||||| || ||||| || | ||| Sbjct 4146 CGCTGATAGAGCTGGCAGGATAGCTCGCCCTGCGCCACATAGAACTGGGCCAGACAGTGG 4205 Query 21135 CAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGC 21194 || || || || |||||| | | || |||| || ||||||| | |||| | ||||| Sbjct 4206 CACGGCGGCAGTGCCATCTGTGGGATATCCGATGGATTCCACGAGGACATGATCATGCGT 4265 Query 21195 CGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGA 21254 ||||||| || | || | | ||| |||| || || || |||| Sbjct 4266 CGATCGTTCGGATCGTGGCGTATGGTGTGTATGACGCGTTGCAGTTGATCGACTCCCTCG 4325 Query 21255 CCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCG 21314 || |||| | || | || | ||||| || ||||| || | |||||| || || Sbjct 4326 CCGGAATAGTCGTCGCTGCAGCCGCGGTACTTGGCGCCAAAGTGACGCCACTGAAAGCCA 4385 Query 21315 TACACCGGCCCCAGATCGCCCTCGCGGCGGTCC 21347 || ||||||||||| ||||||||| ||| ||| Sbjct 4386 TATACCGGCCCCAGGTCGCCCTCGACGCGATCC 4418 >seq5260 Length=19401 Score = 105 bits (116), Expect = 6e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 20928 GGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGG 20987 ||||| || ||||| || || || | ||| |||| ||||||||||||||| ||||| Sbjct 12344 GGATCCACATGGTTCAAATACACATGCGTGTCTCCCATGGTGTGCACAAAGTCGCCCGGC 12285 Query 20988 GTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAAC 21047 | ||||| || || |||||||||| || || || | || || ||| |||||||| Sbjct 12284 TTGAGGCCAGTCACATGAGCGATCATGTAGGTGAGCAACGCATACGAGGCAATGTTAAAG 12225 Query 21048 GGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGA 21107 || || || | |||||||| ||| | || || | ||| ||||||||||| || ||| Sbjct 12224 GGCACACCCAAACCCATGTCAGCGCTTCGTTGATATAACTGACAGGACAGCTCGCCACGA 12165 Query 21108 GCC 21110 || Sbjct 12164 TCC 12162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427597697616000