Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq17074 158 1e-33
seq5260 105 6e-18
>seq17074
Length=21176
Score = 158 bits (174), Expect = 1e-33
Identities = 382/573 (67%), Gaps = 8/573 (1%)
Strand=Plus/Plus
Query 20779 AAACGGCCATCTCCATCTCTATGTGGGGATGGGGGTCGTAGCCCTCGAGACT--CAGATC 20836
|||||||||| ||||| | || | ||||| || | ||| |||||| | || |
Sbjct 3850 AAACGGCCATTTCCATGTGGATCTTGGGATATGGCTGATAG---TCGAGAATTTCAAAGT 3906
Query 20837 CG-CGC-GCGTAAAGTCCTCCAGACGCGCCACCTTTCTCAAAATCTTCAGCCGCGGAAAC 20894
|| || ||| ||| ||||| | | | ||||| | | ||| || || || ||
Sbjct 3907 CGTCGAAGCGAAAA-TCCTCTATATTCTGCACCTGCCGCCGAATGTTTAGTTTGGGGAAG 3965
Query 20895 GGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGG 20954
||||| || | | | |||||| | ||| ||||||||||| ||| || || |||
Sbjct 3966 GGACGAGGCTTGCGCTTCAGCTGCTCCTTCAGAGGATCAACGTGATTGCGATAGACATGG 4025
Query 20955 GCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGA 21014
| ||| ||| | ||||||||| || ||||| ||| ||||| || || |||||||
Sbjct 4026 GTGTCGCCCGTGACGTGCACAAACTCGCCCGGTCGCAGACCCGTCACATGCGCGATCATG 4085
Query 21015 TACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGAC 21074
|||| || || || ||| || ||||| || || || || || ||||| || ||
Sbjct 4086 CACGTGAGCAGCGCATAGGATGCAATGTTGAAGGGCACACCCAGACCCATATCAGCACTG 4145
Query 21075 CTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGA 21134
| ||| || ||||||||||| ||||| ||| | ||||| || ||||| || | |||
Sbjct 4146 CGCTGATAGAGCTGGCAGGATAGCTCGCCCTGCGCCACATAGAACTGGGCCAGACAGTGG 4205
Query 21135 CAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGC 21194
|| || || || |||||| | | || |||| || ||||||| | |||| | |||||
Sbjct 4206 CACGGCGGCAGTGCCATCTGTGGGATATCCGATGGATTCCACGAGGACATGATCATGCGT 4265
Query 21195 CGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGA 21254
||||||| || | || | | ||| |||| || || || ||||
Sbjct 4266 CGATCGTTCGGATCGTGGCGTATGGTGTGTATGACGCGTTGCAGTTGATCGACTCCCTCG 4325
Query 21255 CCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCG 21314
|| |||| | || | || | ||||| || ||||| || | |||||| || ||
Sbjct 4326 CCGGAATAGTCGTCGCTGCAGCCGCGGTACTTGGCGCCAAAGTGACGCCACTGAAAGCCA 4385
Query 21315 TACACCGGCCCCAGATCGCCCTCGCGGCGGTCC 21347
|| ||||||||||| ||||||||| ||| |||
Sbjct 4386 TATACCGGCCCCAGGTCGCCCTCGACGCGATCC 4418
>seq5260
Length=19401
Score = 105 bits (116), Expect = 6e-18
Identities = 133/183 (73%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 20928 GGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGG 20987
||||| || ||||| || || || | ||| |||| ||||||||||||||| |||||
Sbjct 12344 GGATCCACATGGTTCAAATACACATGCGTGTCTCCCATGGTGTGCACAAAGTCGCCCGGC 12285
Query 20988 GTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAAC 21047
| ||||| || || |||||||||| || || || | || || ||| ||||||||
Sbjct 12284 TTGAGGCCAGTCACATGAGCGATCATGTAGGTGAGCAACGCATACGAGGCAATGTTAAAG 12225
Query 21048 GGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGA 21107
|| || || | |||||||| ||| | || || | ||| ||||||||||| || |||
Sbjct 12224 GGCACACCCAAACCCATGTCAGCGCTTCGTTGATATAACTGACAGGACAGCTCGCCACGA 12165
Query 21108 GCC 21110
||
Sbjct 12164 TCC 12162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427597697616000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |