Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq20705 138 1e-27
>seq20705
Length=54059
Score = 138 bits (152), Expect = 1e-27
Identities = 481/743 (65%), Gaps = 11/743 (1%)
Strand=Plus/Plus
Query 153072 TTGACAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTAC-TGTGAAACGG 153130
|| || ||||| ||||| || || || || ||||| | | |||| |||| | |||
Sbjct 37686 TTTACTACTTGGAATTCACCAGATAACACCCGTCTGGTGTAAATATTAGATGTGTA-CGG 37744
Query 153131 TTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCAC 153190
|| || || || || ||| | |||||| || || | || || ||||| || |
Sbjct 37745 CTCGAAGGATTCATTATTACCCATTATTTGGGCAGTGGATGCTGTAGGCATTGGTGCAAT 37804
Query 153191 AAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGA-CCAGTCCC 153249
|||||| ||||| || | |||||||| | || | | || || ||| ||||||||
Sbjct 37805 AAGCAAAGAATTGCGAACGCCGTGTTTCTTAATTGACGTTTT-AAGTGTATTCCAGTCCC 37863
Query 153250 ATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGC 153309
|||| || || | |||||||| || || || || || |||| || || ||
Sbjct 37864 ATAAATCTGTTGGAGTTTTATTCCACATGTCATACTGTAAAATACCTTTACTCACTGGGC 37923
Query 153310 TACCGGCAAACGTGCTATACGGCTCACTGTCAGACGCCAGTTTCAAACTGGCATCGAGCG 153369
| || || | || || || || || || | |||| || |||||||
Sbjct 37924 TGCCTTCATATGTTTCGTAGTAGCCATGTTCTTGTGCGAGCTCGCAACTTGCCTCGAGCG 37983
Query 153370 CGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACGT 153429
| || ||| | || ||| ||||||| | ||| || | | || ||||||| |||
Sbjct 37984 CTCCAAAATATATTGTCTCGAAAATCTGCTGGTTTAGAAGAGATGCCTCATCGCTTTCGT 38043
Query 153430 ACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGAC 153489
| || |||| | || | ||||||||| || || |||| ||||| || || ||||
Sbjct 38044 AAGGATACCGCATTAAGATCAGTGCATCGGCAAAGCCCTGAACACCAATTCCAATAGGAC 38103
Query 153490 GATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATTT 153549
| || | | || |||||||| || || | |||||| || ||| || || ||||
Sbjct 38104 GGTGCCTTAAGTTCGATTTTTTAGCCTCTGGTAGAGGATAAAAGTTGATATCAATTATTT 38163
Query 153550 TATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAAACGTTC 153609
| || || | | ||| || ||| | ||| || ||| || | ||
Sbjct 38164 TGTTCAAGTTTTTTGTAACAATCTTTGTTACATCTTTCAATTTTTTAAAGTCGTATTTTT 38223
Query 153610 CATT---AATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGT 153666
| | ||| | | | |||| ||| || || || ||||||||||| ||| |||| |
Sbjct 38224 TTTCGGGAGTGACAAACATATTGAGGGCTATGGAAGCTAAGTTGCAAACAGCAATTTCAT 38283
Query 153667 CGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAA- 153725
| |||||| |||| | || ||||| | ||| |||||||||||||| || || |||
Sbjct 38284 CAGGGGCGGAATACTCCACAATTTCGGTACATAAATTGCTGCATTTAAT--GGTTCCAAC 38341
Query 153726 -TTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGT 153784
|| |||||| |||||||| ||||| | || ||| | ||||| ||||| || || ||
Sbjct 38342 GTTTTGTTGATTACTTTTGCGATTACAGGAATCTTTGAACAGCATATATGGAGTACCAGT 38401
Query 153785 TTCGGCTTGAATTTCTATAATAG 153807
||| ||||| || || ||||
Sbjct 38402 TTCTACTTGAGACTCAATTATAG 38424
Score = 123 bits (136), Expect = 2e-23
Identities = 155/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| ||||| | |||||||||||||||||||| || ||| || |||| |||||
Sbjct 6878 ACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTCC 6937
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675
| ||||| |||||| ||||||||||||| ||||| ||||| || || |||||||| ||
Sbjct 6938 AATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTC-CTG 6996
Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734
| | || | ||| | | ||| | ||| || | || || ||||||| ||| | |||||
Sbjct 6997 AATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTT 7056
Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| || | || || ||||| || |||||
Sbjct 7057 GCCCGTTAGGGTCTTAACGAAAATCTGCAT 7086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495851932640000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |