Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq20705 138 1e-27 >seq20705 Length=54059 Score = 138 bits (152), Expect = 1e-27 Identities = 481/743 (65%), Gaps = 11/743 (1%) Strand=Plus/Plus Query 153072 TTGACAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTAC-TGTGAAACGG 153130 || || ||||| ||||| || || || || ||||| | | |||| |||| | ||| Sbjct 37686 TTTACTACTTGGAATTCACCAGATAACACCCGTCTGGTGTAAATATTAGATGTGTA-CGG 37744 Query 153131 TTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCAC 153190 || || || || || ||| | |||||| || || | || || ||||| || | Sbjct 37745 CTCGAAGGATTCATTATTACCCATTATTTGGGCAGTGGATGCTGTAGGCATTGGTGCAAT 37804 Query 153191 AAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGA-CCAGTCCC 153249 |||||| ||||| || | |||||||| | || | | || || ||| |||||||| Sbjct 37805 AAGCAAAGAATTGCGAACGCCGTGTTTCTTAATTGACGTTTT-AAGTGTATTCCAGTCCC 37863 Query 153250 ATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGC 153309 |||| || || | |||||||| || || || || || |||| || || || Sbjct 37864 ATAAATCTGTTGGAGTTTTATTCCACATGTCATACTGTAAAATACCTTTACTCACTGGGC 37923 Query 153310 TACCGGCAAACGTGCTATACGGCTCACTGTCAGACGCCAGTTTCAAACTGGCATCGAGCG 153369 | || || | || || || || || || | |||| || ||||||| Sbjct 37924 TGCCTTCATATGTTTCGTAGTAGCCATGTTCTTGTGCGAGCTCGCAACTTGCCTCGAGCG 37983 Query 153370 CGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACGT 153429 | || ||| | || ||| ||||||| | ||| || | | || ||||||| ||| Sbjct 37984 CTCCAAAATATATTGTCTCGAAAATCTGCTGGTTTAGAAGAGATGCCTCATCGCTTTCGT 38043 Query 153430 ACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGAC 153489 | || |||| | || | ||||||||| || || |||| ||||| || || |||| Sbjct 38044 AAGGATACCGCATTAAGATCAGTGCATCGGCAAAGCCCTGAACACCAATTCCAATAGGAC 38103 Query 153490 GATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATTT 153549 | || | | || |||||||| || || | |||||| || ||| || || |||| Sbjct 38104 GGTGCCTTAAGTTCGATTTTTTAGCCTCTGGTAGAGGATAAAAGTTGATATCAATTATTT 38163 Query 153550 TATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAAACGTTC 153609 | || || | | ||| || ||| | ||| || ||| || | || Sbjct 38164 TGTTCAAGTTTTTTGTAACAATCTTTGTTACATCTTTCAATTTTTTAAAGTCGTATTTTT 38223 Query 153610 CATT---AATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGT 153666 | | ||| | | | |||| ||| || || || ||||||||||| ||| |||| | Sbjct 38224 TTTCGGGAGTGACAAACATATTGAGGGCTATGGAAGCTAAGTTGCAAACAGCAATTTCAT 38283 Query 153667 CGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAA- 153725 | |||||| |||| | || ||||| | ||| |||||||||||||| || || ||| Sbjct 38284 CAGGGGCGGAATACTCCACAATTTCGGTACATAAATTGCTGCATTTAAT--GGTTCCAAC 38341 Query 153726 -TTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGT 153784 || |||||| |||||||| ||||| | || ||| | ||||| ||||| || || || Sbjct 38342 GTTTTGTTGATTACTTTTGCGATTACAGGAATCTTTGAACAGCATATATGGAGTACCAGT 38401 Query 153785 TTCGGCTTGAATTTCTATAATAG 153807 ||| ||||| || || |||| Sbjct 38402 TTCTACTTGAGACTCAATTATAG 38424 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | |||||||||||||||||||| || ||| || |||| ||||| Sbjct 6878 ACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTCC 6937 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||||| |||||| ||||||||||||| ||||| ||||| || || |||||||| || Sbjct 6938 AATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTC-CTG 6996 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||| | | ||| | ||| || | || || ||||||| ||| | ||||| Sbjct 6997 AATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTT 7056 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | || || ||||| || ||||| Sbjct 7057 GCCCGTTAGGGTCTTAACGAAAATCTGCAT 7086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495851932640000