Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq13173 107 2e-18
>seq13173
Length=15772
Score = 107 bits (118), Expect = 2e-18
Identities = 446/696 (64%), Gaps = 16/696 (2%)
Strand=Plus/Minus
Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553
||| || | ||| ||||| |||| |||||| | | |||||||| || |||| |||||
Sbjct 14610 ATCGGCGACAAATTCAATGTATTCAGACATCAGTTTGCAATTCATGCCAATTAAGTTTAC 14551
Query 13554 AGGAATTATATTAGTTAAAAATTCTTTTTCTATAGAC-ACAGCCTCGTTTATAATAATCT 13612
|| | | || | || || | ||| || ||| ||||| || | ||| || |
Sbjct 14550 GGGCAAAGCGTCTGTGAGGAACTCCTGTTCGAT-GACTACAGCATC---TGAAATGATTT 14495
Query 13613 TAATAATG---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG-CAAAA 13668
||||||| ||| | ||| | | ||||| | || || | |||| |||||
Sbjct 14494 CAATAATGCGTTCACGACTGGGACGTTGAACCAGATGCTGGAACATCAG-CACGGCAAAA 14436
Query 13669 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13728
|| ||||| || ||||| || | ||| | || ||||| || || | || |||||
Sbjct 14435 TCGCAATGTAGACCCTCGTCGCGTGAAATTAACTCATTTGAGAAGGTAAGACCGGGCATA 14376
Query 13729 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 13788
| || || || || |||||||| |||| |||||| || |||||| || || ||
Sbjct 14375 AGACCGCGCTTCTTCAACCAAAAGATTGAAGCGAAGCTGCCACTAAAGAAGATGCCTTCG 14316
Query 13789 ACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTT 13848
|| || ||||| ||||| | ||||| ||||| ||| || || |||||
Sbjct 14315 ACGGCGGCAAAAGCTATAATGCGTTCACCAAAATTGGCTGACTTTGAAGAAATCCAAGCG 14256
Query 13849 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGT 13908
||||| || | || || | ||| || || || |||||||| | ||
Sbjct 14255 AGGGCCCAGTCCGCCTTGCGCTTTACTGCTGGCATAGTCTCAATCGCATTGAAAAGATAG 14196
Query 13909 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 13968
|| | | || | || || || || ||||||| ||| |||||||| || ||
Sbjct 14195 TCGCGTTGATGAGGATCACGTATATAGGTGTCGATAAGTACGCTGTACATTTCCGAATGC 14136
Query 13969 ATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC 14028
| ||| || || || || || || ||||||||||| | || || | || ||||||
Sbjct 14135 ACGTTCTCCATGGCAATTTGGAAGCCATAAAAACAACGTGCCTCGGTTATCTGCACCTCC 14076
Query 14029 GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC 14088
| ||| | |||| ||| ||||| || ||||| ||||| || || || ||||||
Sbjct 14075 TGGCTAAAGCGTTCTACCAGATTTTCGTTGACAATGCCATCTGATGCGGCGAAGAATGCC 14016
Query 14089 AATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGCTAAA 14145
|| | | ||||||| || ||||||| | || |||||||| | |
Sbjct 14015 AACACATGAGATATAAAGTGACGC---TCATTGTCAGTCAGGCGATTCCAATCTGTCATG 13959
Query 14146 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14181
||||| || ||||| || || || || ||||| |||
Sbjct 13958 TCCTTGGACAGATCCACCTCTTCGACCGTCCAGAAA 13923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478384203288000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |