Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq13173 107 2e-18 >seq13173 Length=15772 Score = 107 bits (118), Expect = 2e-18 Identities = 446/696 (64%), Gaps = 16/696 (2%) Strand=Plus/Minus Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553 ||| || | ||| ||||| |||| |||||| | | |||||||| || |||| ||||| Sbjct 14610 ATCGGCGACAAATTCAATGTATTCAGACATCAGTTTGCAATTCATGCCAATTAAGTTTAC 14551 Query 13554 AGGAATTATATTAGTTAAAAATTCTTTTTCTATAGAC-ACAGCCTCGTTTATAATAATCT 13612 || | | || | || || | ||| || ||| ||||| || | ||| || | Sbjct 14550 GGGCAAAGCGTCTGTGAGGAACTCCTGTTCGAT-GACTACAGCATC---TGAAATGATTT 14495 Query 13613 TAATAATG---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG-CAAAA 13668 ||||||| ||| | ||| | | ||||| | || || | |||| ||||| Sbjct 14494 CAATAATGCGTTCACGACTGGGACGTTGAACCAGATGCTGGAACATCAG-CACGGCAAAA 14436 Query 13669 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13728 || ||||| || ||||| || | ||| | || ||||| || || | || ||||| Sbjct 14435 TCGCAATGTAGACCCTCGTCGCGTGAAATTAACTCATTTGAGAAGGTAAGACCGGGCATA 14376 Query 13729 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 13788 | || || || || |||||||| |||| |||||| || |||||| || || || Sbjct 14375 AGACCGCGCTTCTTCAACCAAAAGATTGAAGCGAAGCTGCCACTAAAGAAGATGCCTTCG 14316 Query 13789 ACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTT 13848 || || ||||| ||||| | ||||| ||||| ||| || || ||||| Sbjct 14315 ACGGCGGCAAAAGCTATAATGCGTTCACCAAAATTGGCTGACTTTGAAGAAATCCAAGCG 14256 Query 13849 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGT 13908 ||||| || | || || | ||| || || || |||||||| | || Sbjct 14255 AGGGCCCAGTCCGCCTTGCGCTTTACTGCTGGCATAGTCTCAATCGCATTGAAAAGATAG 14196 Query 13909 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 13968 || | | || | || || || || ||||||| ||| |||||||| || || Sbjct 14195 TCGCGTTGATGAGGATCACGTATATAGGTGTCGATAAGTACGCTGTACATTTCCGAATGC 14136 Query 13969 ATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC 14028 | ||| || || || || || || ||||||||||| | || || | || |||||| Sbjct 14135 ACGTTCTCCATGGCAATTTGGAAGCCATAAAAACAACGTGCCTCGGTTATCTGCACCTCC 14076 Query 14029 GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC 14088 | ||| | |||| ||| ||||| || ||||| ||||| || || || |||||| Sbjct 14075 TGGCTAAAGCGTTCTACCAGATTTTCGTTGACAATGCCATCTGATGCGGCGAAGAATGCC 14016 Query 14089 AATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGCTAAA 14145 || | | ||||||| || ||||||| | || |||||||| | | Sbjct 14015 AACACATGAGATATAAAGTGACGC---TCATTGTCAGTCAGGCGATTCCAATCTGTCATG 13959 Query 14146 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14181 ||||| || ||||| || || || || ||||| ||| Sbjct 13958 TCCTTGGACAGATCCACCTCTTCGACCGTCCAGAAA 13923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478384203288000