Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq20705 91.5 1e-13 >seq20705 Length=54059 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||| || | || ||| ||||| | ||||| |||||| Sbjct 6860 CCACCACGGAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGAC 6919 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||||||||||||| ||||| |||| || |||||||| | || Sbjct 6920 AGAGTGCGACCATCTTCCAATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGA 6979 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || ||| ||| ||||||| | | | ||| || || ||||| Sbjct 6980 ATTCCCTCTTTGTC-CTGAATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGAC 7038 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || || || ||||| || || || ||||| |||||| Sbjct 7039 CTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTAACGAAAATCTGCATT 7087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381210640383600