Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq20705 120 3e-22
>seq20705
Length=54059
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035
|| || || | |||||| |||||||| |||||||| ||| || |||| |||||
Sbjct 6878 ACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTCC 6937
Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095
| |||||| |||||| ||||||||||||| ||||| ||||| || || |||||||| |
Sbjct 6938 AATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGA 6997
Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155
|| || ||| | | ||| | || |||| ||||| || |||| || | ||||||
Sbjct 6998 ATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTG 7057
Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| || | || || ||||| || |||||
Sbjct 7058 CCCGTTAGGGTCTTAACGAAAATCTGCAT 7086
Score = 120 bits (132), Expect = 3e-22
Identities = 707/1110 (64%), Gaps = 38/1110 (3%)
Strand=Plus/Plus
Query 156494 TTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTAC-TGTGAAACGG 156552
|| || ||||| ||||| || || || || ||||| | | |||| |||| | |||
Sbjct 37686 TTTACTACTTGGAATTCACCAGATAACACCCGTCTGGTGTAAATATTAGATGTGTA-CGG 37744
Query 156553 TTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCAC 156612
|| || || || || || | |||||| || || | || || ||||| || |
Sbjct 37745 CTCGAAGGATTCATTATTACCCATTATTTGGGCAGTGGATGCTGTAGGCATTGGTGCAAT 37804
Query 156613 AAGCAATGAATTACGTAATCCGTATTTTTGTATATTTAT-TTTCAACTGTGA-CCAGTCC 156670
|||||| ||||| || | |||| ||| | || ||| | ||| || ||| |||||||
Sbjct 37805 AAGCAAAGAATTGCGAACGCCGTGTTTCT-TA-ATTGACGTTTTAAGTGTATTCCAGTCC 37862
Query 156671 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTG 156730
||||| || || ||||||||| || || || || || |||| ||| || |
Sbjct 37863 CATAAATCTGTTGGAGTTTTATTCCACATGTCATACTGTAAAATACCTTTACTCACTGGG 37922
Query 156731 CTACCGGCAAACGTGCTATAAGGCTCACTAACAGATGCCAGTTCGTAACTGGCCTCGAGC 156790
|| || || | || || || | ||| || ||| |||| |||||||||
Sbjct 37923 CTGCCTTCATATGTTTCGTAGTAGCCATGTTCTTGTGCGAGCTCGCAACTTGCCTCGAGC 37982
Query 156791 GCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACG 156850
|| || ||| | || || ||| || | || | ||| || ||||||| ||
Sbjct 37983 GCTCCAAAATATATTGTCTCGAAAATCTGCTGGTTTAGAAGAGATGCCTCATCGCTTTCG 38042
Query 156851 TACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGA 156910
|| || |||| | | | ||||||||| || || |||| ||||| || || |||
Sbjct 38043 TAAGGATACCGCATTAAGATCAGTGCATCGGCAAAGCCCTGAACACCAATTCCAATAGGA 38102
Query 156911 CGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATT 156970
|| || | | || |||||||| || | | ||| || || ||| |||||| |||
Sbjct 38103 CGGTGCCTTAAGTTCGATTTTTTAGCCTCTGGTAGAGGATAAAAGTTGATATCAATTATT 38162
Query 156971 TTATTCAAACTATCCACTACA-TGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGT 157029
|| ||||| | | ||| | |||| ||| | |||| || ||| || ||
Sbjct 38163 TTGTTCAAGTTTTTTGTAACAATCTTTGTT-ACATCTTTCAATTTTTTAAAGTC----GT 38217
Query 157030 ATCATTATT-------GATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAG 157082
|| || || || | | |||||| ||| || || |||| || || || |||
Sbjct 38218 ATTTTTTTTCGGGAGTGACAAACATATTGAGGGCTATGGAAGCTAAGTTGCAAACAGCAA 38277
Query 157083 TTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATC 157142
|||| || || ||| |||| | || ||||| | ||| |||||||||||||| || ||
Sbjct 38278 TTTCATCAGGGGCGGAATACTCCACAATTTCGGTACATAAATTGCTGCATTTAATGGTTC 38337
Query 157143 CGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGC 157202
| || |||||| |||||||| || || | || ||| | | ||| || || || |
Sbjct 38338 CAACGTTTTGTTGATTACTTTTGCGATTACAGGAATCTTTGAACAGCATATATGGAGTAC 38397
Query 157203 CGGTTTCGGCTTGAATTTCTATGATGTTGCGCATTAATGTAACCGCG-GGCATTTGCTCG 157261
| ||||| ||||| || || | | || | | | | ||| | ||| |||
Sbjct 38398 CAGTTTCTACTTGAGACTCAAT--TATAGCAAACCACAGAGATTGCGCTTTAATTGTTCG 38455
Query 157262 CGAAAC-TGGCCTTTATCCTCGTAATGTTTG---TACCAGTAT-TCAAAGTCATCACCAT 157316
| | ||||| |||| | || |||| || ||| | ||||| || || ||
Sbjct 38456 ATTAGCACGGCCT---TCCTGTTCATATTTGACATA-GAGTTTATCAAACTCTTCTCCCC 38511
Query 157317 ACGTATCGT-TGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATAC-CGTTTTC 157374
| ||| | | ||| |||||| | | || ||||| |||||||| || | | || |
Sbjct 38512 AAACATCATGTAAGC-CAGGACATTTATGTGGGCACATCAATGACCA-ATCCTCATTAGC 38569
Query 157375 TTCAACGCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTT 157434
|||||| || |||||||| | ||| || | ||||||||| | | | ||| || ||
Sbjct 38570 TTCAACACGCTTCATAAAAAGATCTGGTATCCATAAAGCATAGAAAAGATCTCGGGCACG 38629
Query 157435 GGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCA 157494
| || || ||||| ||||| | || ||||| || | | ||| |||||||
Sbjct 38630 ATTTTCCTCCTTGCCAGTGTTTTTTTTTAAGTCTAAAAATTCAAACACGTCTGAATGCCA 38689
Query 157495 CGGTTCAACGTACACTGCTTGGGCTCCTTTTCGCTTGCCACCT---TGATCCACGTGACG 157551
||||| | || | ||| ||| || ||||| |||||| || || || | ||
Sbjct 38690 AGGTTCTAAATAAATTGCAAAGGCACCAGGACGCTTTCCACCTCCCTGGTCAACATAGCG 38749
Query 157552 CACCATATTATTAAAAACTCGCAGCATTGG 157581
||| || |||||||||| ||||||||
Sbjct 38750 AGCCACGTTGTTAAAAACTCTTAGCATTGG 38779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506797651344000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |