Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq20705 120 3e-22 >seq20705 Length=54059 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || || | |||||| |||||||| |||||||| ||| || |||| ||||| Sbjct 6878 ACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTCC 6937 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||| |||||| ||||||||||||| ||||| ||||| || || |||||||| | Sbjct 6938 AATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGA 6997 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | ||| | || |||| ||||| || |||| || | |||||| Sbjct 6998 ATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTG 7057 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | || || ||||| || ||||| Sbjct 7058 CCCGTTAGGGTCTTAACGAAAATCTGCAT 7086 Score = 120 bits (132), Expect = 3e-22 Identities = 707/1110 (64%), Gaps = 38/1110 (3%) Strand=Plus/Plus Query 156494 TTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTAC-TGTGAAACGG 156552 || || ||||| ||||| || || || || ||||| | | |||| |||| | ||| Sbjct 37686 TTTACTACTTGGAATTCACCAGATAACACCCGTCTGGTGTAAATATTAGATGTGTA-CGG 37744 Query 156553 TTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCAC 156612 || || || || || || | |||||| || || | || || ||||| || | Sbjct 37745 CTCGAAGGATTCATTATTACCCATTATTTGGGCAGTGGATGCTGTAGGCATTGGTGCAAT 37804 Query 156613 AAGCAATGAATTACGTAATCCGTATTTTTGTATATTTAT-TTTCAACTGTGA-CCAGTCC 156670 |||||| ||||| || | |||| ||| | || ||| | ||| || ||| ||||||| Sbjct 37805 AAGCAAAGAATTGCGAACGCCGTGTTTCT-TA-ATTGACGTTTTAAGTGTATTCCAGTCC 37862 Query 156671 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTG 156730 ||||| || || ||||||||| || || || || || |||| ||| || | Sbjct 37863 CATAAATCTGTTGGAGTTTTATTCCACATGTCATACTGTAAAATACCTTTACTCACTGGG 37922 Query 156731 CTACCGGCAAACGTGCTATAAGGCTCACTAACAGATGCCAGTTCGTAACTGGCCTCGAGC 156790 || || || | || || || | ||| || ||| |||| ||||||||| Sbjct 37923 CTGCCTTCATATGTTTCGTAGTAGCCATGTTCTTGTGCGAGCTCGCAACTTGCCTCGAGC 37982 Query 156791 GCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACG 156850 || || ||| | || || ||| || | || | ||| || ||||||| || Sbjct 37983 GCTCCAAAATATATTGTCTCGAAAATCTGCTGGTTTAGAAGAGATGCCTCATCGCTTTCG 38042 Query 156851 TACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGA 156910 || || |||| | | | ||||||||| || || |||| ||||| || || ||| Sbjct 38043 TAAGGATACCGCATTAAGATCAGTGCATCGGCAAAGCCCTGAACACCAATTCCAATAGGA 38102 Query 156911 CGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATT 156970 || || | | || |||||||| || | | ||| || || ||| |||||| ||| Sbjct 38103 CGGTGCCTTAAGTTCGATTTTTTAGCCTCTGGTAGAGGATAAAAGTTGATATCAATTATT 38162 Query 156971 TTATTCAAACTATCCACTACA-TGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGT 157029 || ||||| | | ||| | |||| ||| | |||| || ||| || || Sbjct 38163 TTGTTCAAGTTTTTTGTAACAATCTTTGTT-ACATCTTTCAATTTTTTAAAGTC----GT 38217 Query 157030 ATCATTATT-------GATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAG 157082 || || || || | | |||||| ||| || || |||| || || || ||| Sbjct 38218 ATTTTTTTTCGGGAGTGACAAACATATTGAGGGCTATGGAAGCTAAGTTGCAAACAGCAA 38277 Query 157083 TTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATC 157142 |||| || || ||| |||| | || ||||| | ||| |||||||||||||| || || Sbjct 38278 TTTCATCAGGGGCGGAATACTCCACAATTTCGGTACATAAATTGCTGCATTTAATGGTTC 38337 Query 157143 CGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGC 157202 | || |||||| |||||||| || || | || ||| | | ||| || || || | Sbjct 38338 CAACGTTTTGTTGATTACTTTTGCGATTACAGGAATCTTTGAACAGCATATATGGAGTAC 38397 Query 157203 CGGTTTCGGCTTGAATTTCTATGATGTTGCGCATTAATGTAACCGCG-GGCATTTGCTCG 157261 | ||||| ||||| || || | | || | | | | ||| | ||| ||| Sbjct 38398 CAGTTTCTACTTGAGACTCAAT--TATAGCAAACCACAGAGATTGCGCTTTAATTGTTCG 38455 Query 157262 CGAAAC-TGGCCTTTATCCTCGTAATGTTTG---TACCAGTAT-TCAAAGTCATCACCAT 157316 | | ||||| |||| | || |||| || ||| | ||||| || || || Sbjct 38456 ATTAGCACGGCCT---TCCTGTTCATATTTGACATA-GAGTTTATCAAACTCTTCTCCCC 38511 Query 157317 ACGTATCGT-TGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATAC-CGTTTTC 157374 | ||| | | ||| |||||| | | || ||||| |||||||| || | | || | Sbjct 38512 AAACATCATGTAAGC-CAGGACATTTATGTGGGCACATCAATGACCA-ATCCTCATTAGC 38569 Query 157375 TTCAACGCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTT 157434 |||||| || |||||||| | ||| || | ||||||||| | | | ||| || || Sbjct 38570 TTCAACACGCTTCATAAAAAGATCTGGTATCCATAAAGCATAGAAAAGATCTCGGGCACG 38629 Query 157435 GGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCA 157494 | || || ||||| ||||| | || ||||| || | | ||| ||||||| Sbjct 38630 ATTTTCCTCCTTGCCAGTGTTTTTTTTTAAGTCTAAAAATTCAAACACGTCTGAATGCCA 38689 Query 157495 CGGTTCAACGTACACTGCTTGGGCTCCTTTTCGCTTGCCACCT---TGATCCACGTGACG 157551 ||||| | || | ||| ||| || ||||| |||||| || || || | || Sbjct 38690 AGGTTCTAAATAAATTGCAAAGGCACCAGGACGCTTTCCACCTCCCTGGTCAACATAGCG 38749 Query 157552 CACCATATTATTAAAAACTCGCAGCATTGG 157581 ||| || |||||||||| |||||||| Sbjct 38750 AGCCACGTTGTTAAAAACTCTTAGCATTGG 38779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506797651344000