Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq13173 212 9e-50 seq15610 170 3e-37 seq5260 149 9e-31 >seq13173 Length=15772 Score = 212 bits (234), Expect = 9e-50 Identities = 495/738 (67%), Gaps = 44/738 (6%) Strand=Plus/Plus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | || || || ||||||||||||||||| ||||||||||||||| || |||| Sbjct 13910 AGGCCGAAGCATCTTTCTGGACGGTCGAAGAGGTGGATCTGTCCAAGGACATGACAGATT 13969 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 | || ||| ||||||| | |||||| | |||||||| || | ||||| ||||| | Sbjct 13970 G---GAATCGCCTGACTGACAATGAGCGTCACTTTATATCTCATGTGTTGGCATTCTTCG 14026 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217 ||| || ||||| || |||||||| |||||| | ||| || || ||| || | Sbjct 14027 CCGCATCAGATGGCATTGTCAACGAAAATCTGGTAGAACGCTTTAGCCAGGAGGTGCAGA 14086 Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277 | | |||| || ||||| || |||||||| || ||||||||||| ||||||| Sbjct 14087 TAACCGAGGCACGTTGTTTTTATGGCTTCCAAATTGCCATGGAGAACGTGCATTCGGAAA 14146 Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC---ACATGCTCT 125334 ||||| ||| || |||| || || || ||||| || | ||| || || | Sbjct 14147 TGTACAGCGTACTTATCGACACCTATATACGTGATCCTCA---TCAACGCGACTATCTTT 14203 Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGG 125390 | || || || || || |||| | ||||| ||||| | |||| | Sbjct 14204 TCAATGCGATTGAGACTATGCC----AGCAGTAAAGCGCAAGGCGGACTGGGCCCTCGCT 14259 Query 125391 TGGA-----TCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCG 125445 |||| || | | | | | | || || || | | | || || ||||||| Sbjct 14260 TGGATTTCTTCAAAGTCAGCCAATTTTGGT-----GAACGCATTATAGCTTTTGCCGCCG 14314 Query 125446 TAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGAC 125505 | || |||||||||||| || || || || | ||||||||| | ||||||||||| | Sbjct 14315 TCGAAGGCATCTTCTTTAGTGGCAGCTTCGCTTCAATCTTTTGGTTGAAGAAGCGCGGTC 14374 Query 125506 TCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTG 125565 | |||||||| || || | || ||||| || || || |||||||| ||||| || | Sbjct 14375 TTATGCCCGGTCTTACCTTCTCAAATGAGTTAATTTCACGCGACGAGGGTCTACATTGCG 14434 Query 125566 ACTTTGCCATTCTACTGTTTC-GCAACT--ATCTGCGTCCCGAGTGCAGATC-CAGCGAT 125621 | |||||| | || |||| | ||| || || |||||| ||| || | || | Sbjct 14435 ATTTTGCCGTGCTGATGTTCCAGCATCTGGTTCAACGTCCC-AGTCGTGAACGCATTATT 14493 Query 125622 GAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAA 125681 |||| |||| || | ||||| || || ||||| ||||| || || || Sbjct 14494 GAAA---TCAT-----TT----CAGATGCTGTAGTCATCGAACAGGAGTTCCTCACAGAC 14541 Query 125682 TCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTT 125741 | | || || | | | ||||||||||| ||||| || |||| || ||||| || ||| Sbjct 14542 GCTTTGCCCGTAAACTTAATTGGCATGAATTGCAAACTGATGTCTGAATACATTGAATTT 14601 Query 125742 GTGGCAGATCGTCTACTG 125759 || || |||||||| ||| Sbjct 14602 GTCGCCGATCGTCTGCTG 14619 >seq15610 Length=28256 Score = 170 bits (188), Expect = 3e-37 Identities = 381/572 (67%), Gaps = 14/572 (2%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||||| |||||||| ||||| || || || | || ||||||||||| || || || Sbjct 15678 TTGCGGTAGAAGATGACGCCGGCGCGTGGCCCGCGCAGCGTCTTGTGCGTGGTTGTTGTT 15619 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||||||| | | || || || ||||| | | | | || | | ||| || | | Sbjct 15618 ACAATGTCCGCAAATTCGAAAGGTGAGGGAATCAACTCGGCGGCTACTAGGCCAGCCACG 15559 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || ||||||||||| | ||| ||| | ||| |||| ||||| || | Sbjct 15558 TGCGCCATATCGGCCATTAAATAGGCGCCAACCTGATCACAGATCTTGCGGAAACGCTCA 15499 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||||| | || | || ||| ||||||| || || | | ||| ||| Sbjct 15498 TAGTCCAGCAGACGGGAGTAACAAGAAATGCCGGCAATAATGATCTGAGGGCGGAACGTC 15439 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 |||||| ||| | | || | || |||| || |||||||| |||| |||||| || Sbjct 15438 TTGGCAGCCTCCTCCAACTTATCGTAATCGATGATGCCAGTCTGGGGATTCACCTTATAG 15379 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACG------------TTGCGGAATCCG 127449 |||||||||||||| ||| || || || || | | || ||| || Sbjct 15378 GGCATGCTTTCGAAGTAGATGGACGTGGCTGAGATGCGCTTGTTTGGTGTGAAGAAGCCA 15319 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 ||||||| ||||| || ||||| ||||| || |||||||| | | ||||||| | | Sbjct 15318 TGCGTCAAATGGCCACCATCGGGAAGATCTAGACCCATGATACGATCGTGCGGACGACAG 15259 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | || ||||| | ||||| |||||| ||| ||||| || ||||| ||| || ||| Sbjct 15258 ACGCCCGTGTAGGCTGCAAAATTGGCCGGCGATCCCGAATAAGGTTGCACATTGACGCCC 15199 Query 127570 CATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTA-GCAGTTCGAT 127628 || || || || | ||||||| ||| | || ||| || | ||| ||||| Sbjct 15198 CACTCATCCTTATTGAGATTGAACAAGTGGAGGCCGCGACTCTGAGCCATGCA-CTCGAT 15140 Query 127629 GCGATCGATAAACTCGTTACCACCATAGTATC 127660 |||| || ||||| || || |||||||||| Sbjct 15139 CTGATCAATGAACTCATTGCCGCCATAGTATC 15108 >seq5260 Length=19401 Score = 149 bits (164), Expect = 9e-31 Identities = 330/490 (67%), Gaps = 10/490 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 |||||| |||| || || || || || || ||| | |||| ||| | | |||| | Sbjct 11932 GGCGATTTGGGACCCGTCTATGGTTTTCAATGGCGCCACTTTGGCGCACAATATGGCACC 11991 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACTC 70184 || || ||| |||||| | || |||| | ||||| ||| | || | |||||||| Sbjct 11992 TGTGACGAC-GACTATACAGGCAAGGGCATCGATCAGCTGC-GTCAGGTGATTGACACCA 12049 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | | ||||||| ||||| | |||| | |||| | |||||||| ||| | | Sbjct 12050 TACGCAACAATCCATCAGATCGACGGATTATTATGTCTGCCTGGAATCCAATTGATATAC 12109 Query 70245 ACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGA------TG 70298 ||||||| || || || || ||||| || || ||||| || || | | || Sbjct 12110 CAAAAATGGCGCTGCCGCCTTGCCACTGCTTCGCCCAGTTCTATGTGTCCCAGGATCGTG 12169 Query 70299 GCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTA 70358 || | |||| || | ||||| | || || |||||||| | ||||| ||||||| Sbjct 12170 GCGAGCTGTCCTGTCAGTTATATCAACGAAGCGCTGACATGGGTTTGGGTGTGCCCTTTA 12229 Query 70359 ACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGC 70418 ||||||| ||| | || | || ||||||| ||||| | || ||||| || || Sbjct 12230 ACATTGCCTCGTATGCGTTGCTCACCTACATGATCGCTCATGTGACTGGCCTCAAGCCGG 12289 Query 70419 ACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAA 70478 ||| || || |||||||| || ||| | || |||||||| || || | || ||||| | Sbjct 12290 GCGACTTTGTGCACACCATGGGAGACACGCATGTGTATTTGAACCATGTGGATCCATTGA 12349 Query 70479 AGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTG 70538 | | |||||| |||| ||||| | || ||||| || ||| | ||| || ||||| Sbjct 12350 ATGAGCAACTTAAACGCCAGCCGCGGCCCTTTCCGAAACTGCACTTTAAGCGCAAAGTCC 12409 Query 70539 AAAATATTGA 70548 | ||||||| Sbjct 12410 AGGATATTGA 12419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740742397192000