Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq20705 95.1 8e-15 seq30232 87.8 1e-12 >seq20705 Length=54059 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| |||||||| ||||||||||| || ||||| || |||| | || | || || Sbjct 6877 CACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTC 6936 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 |||||| || ||| ||| || | |||||| || || | || || || ||||| || Sbjct 6937 CAATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTG 6996 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 |||| ||| || ||| || || || |||| || || || || || || || Sbjct 6997 AATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTT 7056 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || || |||||||| ||||| Sbjct 7057 GCCCGTTAGGGTCTTAACGAAAATCTGCAT 7086 >seq30232 Length=15380 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||||||||| || ||||| || || || ||||| || |||| | || || ||| || Sbjct 15121 CACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTC 15180 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 || ||||| ||| || || ||||| ||||| || | ||| |||||||| || || Sbjct 15181 CAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTG 15240 Query 33280 AATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 |||| ||| || || | | ||| || || ||| | || || ||||| || || Sbjct 15241 AATCTTGGCC---TTAACATTCTCAATGGTATCTGAGGGCTCCACTTCGAGAGTGATGGT 15297 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || | || || ||||| || ||||| Sbjct 15298 CTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 15330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318644729511600