Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq20705 95.1 8e-15
seq30232 87.8 1e-12
>seq20705
Length=54059
Score = 95.1 bits (104), Expect = 8e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219
|||||| |||||||| ||||||||||| || ||||| || |||| | || | || ||
Sbjct 6877 CACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTC 6936
Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279
|||||| || ||| ||| || | |||||| || || | || || || ||||| ||
Sbjct 6937 CAATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTG 6996
Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339
|||| ||| || ||| || || || |||| || || || || || || ||
Sbjct 6997 AATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTT 7056
Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||||| || || || |||||||| |||||
Sbjct 7057 GCCCGTTAGGGTCTTAACGAAAATCTGCAT 7086
>seq30232
Length=15380
Score = 87.8 bits (96), Expect = 1e-12
Identities = 148/213 (69%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219
|||||||||||| || ||||| || || || ||||| || |||| | || || ||| ||
Sbjct 15121 CACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTC 15180
Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279
|| ||||| ||| || || ||||| ||||| || | ||| |||||||| || ||
Sbjct 15181 CAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTG 15240
Query 33280 AATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336
|||| ||| || || | | ||| || || ||| | || || ||||| || ||
Sbjct 15241 AATCTTGGCC---TTAACATTCTCAATGGTATCTGAGGGCTCCACTTCGAGAGTGATGGT 15297
Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || || | || || ||||| || |||||
Sbjct 15298 CTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 15330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318644729511600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |