Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq13173 113 4e-20 >seq13173 Length=15772 Score = 113 bits (124), Expect = 4e-20 Identities = 379/580 (65%), Gaps = 10/580 (2%) Strand=Plus/Minus Query 12986 TCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACA 13045 || || ||||| || ||||| | ||| | | || ||||| || ||||| ||||| Sbjct 14609 TCGGCGACAAATTCAATGTATTCAGACATCAGTTTGCAATTCATGCCAATTAAGTTTACG 14550 Query 13046 GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTT 13105 |||| ||| ||||| | || | | ||| || | || || || || || || | Sbjct 14549 GGCAAAGCGTCTGTGAGGAACTCCTGTTCGATGACTACAGCATCTGAAATGATTTCAATA 14490 Query 13106 ATTACGTTCTCTAATGGAGGATTTGAT--AGATGCTTAAACATCATACATGCAAAATCAC 13163 || ||||| | | ||| | |||| ||||||| ||||||| |||||||| | Sbjct 14489 ATG-CGTTCACGACTGG-GACGTTGAACCAGATGCTGGAACATCAGCACGGCAAAATCGC 14432 Query 13164 AGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCC 13223 | || | || || || | |||| ||| ||||| || || ||||| |||||||| | Sbjct 14431 AATGTAGACCCTCGTCGCGTGAAATTAACTCATTTGAGAAGGTAAGACCGGGCATAAGAC 14372 Query 13224 CTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTG 13283 | || || || | |||||| || | ||| || || ||| || || ||||| || | Sbjct 14371 CGCGCTTCTTCAACCAAAAGATTGAAGCGAAGCTGCCACTAAAGAAGATGCCTTCGACGG 14312 Query 13284 CTGCAAACGCTATCAACCTTTCACCATACGTA-CT-ATTTTTACTCTCTATCCACTTTCT 13341 | ||||| ||||| | | ||||||| | | || | ||| | ||||| Sbjct 14311 CGGCAAAAGCTATAATGCGTTCACCAAAATTGGCTGACTTTGAAGAA--ATCCAAGCGAG 14254 Query 13342 GGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTATTGCGTTAAATAAATAAt 13400 |||||||| || || | || || || | |||| | || || || || || | ||| | Sbjct 14253 GGCCCAGTCCGCCTTGCGCTTTACTGCTGG-CATAGTCTCAATCGCATTGAAAAGATAGT 14195 Query 13401 ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460 || | | || ||||| || || || | || ||| |||||||| ||||| | Sbjct 14194 CGCGTTGATGAGGATCACGTATATAGGTGTCGATAAGTACGCTGTACATTTCCGAATGCA 14135 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGG 13520 || ||||| || |||||||| ||||||||||| | ||||| | || ||| || || Sbjct 14134 CGTTCTCCATGGCAATTTGGAAGCCATAAAAACAACGTGCCTCGGTTATCTGCACCTCCT 14075 Query 13521 AGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560 | ||| | |||| | | |||||||| || || || || Sbjct 14074 GGCTAAAGCGTTCTACCAGATTTTCGTTGACAATGCCATC 14035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430802761148400