Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq20705 176 1e-38 seq10079 109 1e-18 >seq20705 Length=54059 Score = 176 bits (194), Expect = 1e-38 Identities = 163/207 (79%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || |||||||| ||||| ||||| || ||||| || ||||| | ||| ||||| | |||| Sbjct 6884 TGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTCCAATTGT 6943 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || || | |||||||| ||||| ||||| ||||| ||||||||||| Sbjct 6944 TTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGAATCTTG 7003 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | ||||| |||||| ||||| || || || ||||| || || Sbjct 7004 GCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTGCCCGTT 7063 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || ||||||||| || Sbjct 7064 AGGGTCTTAACGAAAATCTGCATTATG 7090 >seq10079 Length=19992 Score = 109 bits (120), Expect = 1e-18 Identities = 183/262 (70%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 238590 CTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGA 238649 || ||||| || || ||| | || |||||| ||||||||||||| | || | ||| Sbjct 12951 CTGTGGAACTCTGCGCAGTTGCAGCTGGTAAAGGAAGGCAAAATGCATGGATTTCTGCGA 12892 Query 238650 ATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATAT 238709 ||||||||||| |||||||| | |||||||| || ||| | ||||| || | | Sbjct 12891 ATGTATTGGGCCAAAAAGATTTTGGAATGGACCGCCTCACCAGAAGAAGCACTGGAGTTT 12832 Query 238710 AGTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGT 238769 | || | || |||||||| ||| | || || ||||||||| || ||||| ||| Sbjct 12831 ACAATATTGCTAAACGATAAGTACAGCTTGGATGGGCGGGATCCTAATGGCTACGTGGGT 12772 Query 238770 TGTATGTGGTCAATATGTGGATTACACGA-TAGGGCATGGTCTGAGAGACCTATATTTGG 238828 || |||||||| || |||| | || || | ||| ||| || || |||| ||||| Sbjct 12771 TGCATGTGGTCTATTGGTGGGGTGCATGACCAAGGC-TGGAAGGAACGATCTATCTTTGG 12713 Query 238829 AAAAGTTAGATACATGAATTAT 238850 ||| | | || ||||| ||| Sbjct 12712 AAAGATACGCTATATGAACTAT 12691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150893871613600