Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq20705 176 1e-38
seq10079 109 1e-18
>seq20705
Length=54059
Score = 176 bits (194), Expect = 1e-38
Identities = 163/207 (79%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416
|| |||||||| ||||| ||||| || ||||| || ||||| | ||| ||||| | ||||
Sbjct 6884 TGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTCCAATTGT 6943
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| |||||||| || || | |||||||| ||||| ||||| ||||| |||||||||||
Sbjct 6944 TTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGAATCTTG 7003
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
||||| |||||||| | ||||| |||||| ||||| || || || ||||| || ||
Sbjct 7004 GCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTGCCCGTT 7063
Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563
|| || || || || ||||||||| ||
Sbjct 7064 AGGGTCTTAACGAAAATCTGCATTATG 7090
>seq10079
Length=19992
Score = 109 bits (120), Expect = 1e-18
Identities = 183/262 (70%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 238590 CTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGA 238649
|| ||||| || || ||| | || |||||| ||||||||||||| | || | |||
Sbjct 12951 CTGTGGAACTCTGCGCAGTTGCAGCTGGTAAAGGAAGGCAAAATGCATGGATTTCTGCGA 12892
Query 238650 ATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATAT 238709
||||||||||| |||||||| | |||||||| || ||| | ||||| || | |
Sbjct 12891 ATGTATTGGGCCAAAAAGATTTTGGAATGGACCGCCTCACCAGAAGAAGCACTGGAGTTT 12832
Query 238710 AGTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGT 238769
| || | || |||||||| ||| | || || ||||||||| || ||||| |||
Sbjct 12831 ACAATATTGCTAAACGATAAGTACAGCTTGGATGGGCGGGATCCTAATGGCTACGTGGGT 12772
Query 238770 TGTATGTGGTCAATATGTGGATTACACGA-TAGGGCATGGTCTGAGAGACCTATATTTGG 238828
|| |||||||| || |||| | || || | ||| ||| || || |||| |||||
Sbjct 12771 TGCATGTGGTCTATTGGTGGGGTGCATGACCAAGGC-TGGAAGGAACGATCTATCTTTGG 12713
Query 238829 AAAAGTTAGATACATGAATTAT 238850
||| | | || ||||| |||
Sbjct 12712 AAAGATACGCTATATGAACTAT 12691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150893871613600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |