Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq6675 138 1e-27 >seq6675 Length=94874 Score = 138 bits (152), Expect = 1e-27 Identities = 205/288 (71%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| || || || || ||| | |||| | ||| || || ||||| ||||| Sbjct 58952 ACGCCGGTTGAACCAAAACCGGCCTCGCCACGTTCAGTGTCTTCCAGCTTGTCCACCATC 59011 Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 |||| || ||| | | || |||||| || || | || || || |||||||| ||| Sbjct 59012 TCCAGTTCCGGGTA-GAAGATGCGCTCACAAATGAATTGAGCAATGCGGTCGCCACGCTT 59070 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 ||||| || ||| ||| | ||||| || || ||||||| ||||||||| ||||| Sbjct 59071 CACCTCAAAGTCGGTGTCTGAGTGATTGAAGAGGACGACGCCCAGGTTGCCGCGATAGTC 59130 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739 |||| | ||| || ||||| || || ||||||| ||| |||||||||||||| || || Sbjct 59131 TTCGTCCACCACACCGGCGCCAACATCAATGAAGTTCTTCACCGCCAGGCCGGAACGTGG 59190 Query 5740 AGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 |||||||| ||||| | || || || | || | |||||| || || Sbjct 59191 GGCCACGCGTCCGTATGATCCCTCTGGCACTTGCACCTGCAGATCAGT 59238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429875147950400