Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq6675 138 1e-27
>seq6675
Length=94874
Score = 138 bits (152), Expect = 1e-27
Identities = 205/288 (71%), Gaps = 2/288 (1%)
Strand=Plus/Plus
Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560
||||| || || || || ||| | |||| | ||| || || ||||| |||||
Sbjct 58952 ACGCCGGTTGAACCAAAACCGGCCTCGCCACGTTCAGTGTCTTCCAGCTTGTCCACCATC 59011
Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619
|||| || ||| | | || |||||| || || | || || || |||||||| |||
Sbjct 59012 TCCAGTTCCGGGTA-GAAGATGCGCTCACAAATGAATTGAGCAATGCGGTCGCCACGCTT 59070
Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679
||||| || ||| ||| | ||||| || || ||||||| ||||||||| |||||
Sbjct 59071 CACCTCAAAGTCGGTGTCTGAGTGATTGAAGAGGACGACGCCCAGGTTGCCGCGATAGTC 59130
Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739
|||| | ||| || ||||| || || ||||||| ||| |||||||||||||| || ||
Sbjct 59131 TTCGTCCACCACACCGGCGCCAACATCAATGAAGTTCTTCACCGCCAGGCCGGAACGTGG 59190
Query 5740 AGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787
|||||||| ||||| | || || || | || | |||||| || ||
Sbjct 59191 GGCCACGCGTCCGTATGATCCCTCTGGCACTTGCACCTGCAGATCAGT 59238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429875147950400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |