Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq11924 120 2e-22 seq13640 116 2e-21 seq10360 116 2e-21 seq4465 113 2e-20 >seq11924 Length=3114 Score = 120 bits (132), Expect = 2e-22 Identities = 84/94 (89%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||||| |||||| | || || ||||||||| |||||||||| |||||||||||||||| Sbjct 2627 AATTA-TAAAAAGTAAATTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATT 2569 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||||||||||||||||||| Sbjct 2568 AGCACGACGCTCTAACCAACTGAGCTAATGGGCC 2535 >seq13640 Length=77883 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 17419 ATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 17478 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||||||||| Sbjct 17479 ACTGAGCTAATGGGCC 17494 >seq10360 Length=64148 Score = 116 bits (128), Expect = 2e-21 Identities = 76/83 (92%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 23483 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 23424 Query 11515 CTGAGCTAATGGGCCGTCGACGA 11537 ||||||||||||||| |||| || Sbjct 23423 CTGAGCTAATGGGCC-TCGATGA 23402 >seq4465 Length=7943 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 990 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 931 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 930 TGAGCTAATGGGCC 917 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261382207199200