Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_006658.1
Length=30655
Score E
Sequences producing significant alignments: (Bits) Value
seq20495 96.9 7e-16
seq16747 86.0 1e-12
>seq20495
Length=1873
Score = 96.9 bits (106), Expect = 7e-16
Identities = 238/357 (67%), Gaps = 22/357 (6%)
Strand=Plus/Minus
Query 7165 AATCCTTTCCGATACCTACCACTCTTCAATTCACTGTCTTTATCTATTACCACAAATCCA 7224
|| ||||||| ||| | ||| | | | || | |||||| ||| || |||||| ||
Sbjct 476 AAACCTTTCCTATATCGTCCATTGTCTACAGCATTATCTTTACTTATAACAACAAATTCA 417
Query 7225 TATTTAT---TCCAACATGCCGAGCATAAATCTCTGAATGAGTTGTATGGCATGTC-CGT 7280
||||||| |||||||| | | |||| ||| | | |||| | | ||| | |
Sbjct 416 TATTTATCTTTCCAACATTT--ACTACAAATATCTAGA--AATTGTTTAAAA-GTCGCCT 362
Query 7281 ATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAG 7340
|| ||||||||||| ||||||||| || | ||||||||||||||| || | | |
Sbjct 361 AT-GACATGATCATTATAAATATGTTTAATATTCATTTCATCTTGTTTAAATATTATAAT 303
Query 7341 AAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGA-- 7398
|| |||||||| || | || | | || |||||| ||||||||||||||| | |
Sbjct 302 TAAATTTGCATTGTCACGTATTAAATATTTTGGTATTTTTGTATAAGTTTGACATACAAG 243
Query 7399 ----------TAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGAT 7448
||||| ||| | || || || |||||||| || ||| || || | ||
Sbjct 242 TAGATACAAGTAGAAAGAGTCTATATGTTTATGACGACCCATACAAAAATAATCTCTTAT 183
Query 7449 GTGATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGC 7505
| ||||| ||||| ||||| ||||||||||| | || || || ||||
Sbjct 182 TGCAGTTTGTTTATCACAGATTACATCATCAAATATCATTATTGAATTCGGTCTAGC 126
>seq16747
Length=6283
Score = 86.0 bits (94), Expect = 1e-12
Identities = 164/238 (69%), Gaps = 4/238 (2%)
Strand=Plus/Plus
Query 7938 TCAACAATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGGTTATCAGTACTGCG 7997
||||||| |||| ||||| | || |||||||||| |||| || ||||| | ||||
Sbjct 2937 TCAACAACTTAATTAACAAT-TACCGGTTGAACTTCATTTACCTGGCTATCAATTTTGCG 2995
Query 7998 GTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAGGTATAAATCCTTTGG 8057
| || || ||||| | | || | || || |||||| |||||| ||||| || |
Sbjct 2996 GACCAGGCACAAAACTTGTTGAGCGTTTGAAACGTGGTGATAAAGGTATTAATCCATTAG 3055
Query 8058 ACGCTGCGTGTAAGGAACACGATATAGCTTACTCAAAAAATCGTGAAAATTTGGAAGCTC 8117
| || ||||||| ||||||||||| || || || | || || || | |||||| ||
Sbjct 3056 ATGCAGCGTGTAGAGAACACGATATTGCATATTC-AGAATTC--AAAGACTTGGAAAATC 3112
Query 8118 GTCACGAGGCTGATAAAATTCTTGCTGAGAAAGCGTGGCAACGATTTCAAGCGAGAGA 8175
| || ||||| | || | | ||| | ||| ||| |||| || |||| | |||
Sbjct 3113 GACATCGCGCTGACGATATATTAGGTGAAAGAGCCTGGAAACGTGTTAAAGCAAAAGA 3170
Score = 86.0 bits (94), Expect = 1e-12
Identities = 164/238 (69%), Gaps = 4/238 (2%)
Strand=Plus/Plus
Query 7938 TCAACAATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGGTTATCAGTACTGCG 7997
||||||| |||| ||||| | || |||||||||| |||| || ||||| | ||||
Sbjct 3402 TCAACAACTTAATTAACAAT-TACCGGTTGAACTTCATTTACCTGGCTATCAATTTTGCG 3460
Query 7998 GTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAGGTATAAATCCTTTGG 8057
| || || ||||| | | || | || || |||||| |||||| ||||| || |
Sbjct 3461 GACCAGGCACAAAACTTGTTGAGCGTTTGAAACGTGGTGATAAAGGTATTAATCCATTAG 3520
Query 8058 ACGCTGCGTGTAAGGAACACGATATAGCTTACTCAAAAAATCGTGAAAATTTGGAAGCTC 8117
| || ||||||| ||||||||||| || || || | || || || | |||||| ||
Sbjct 3521 ATGCAGCGTGTAGAGAACACGATATTGCATATTC-AGAATTC--AAAGACTTGGAAAATC 3577
Query 8118 GTCACGAGGCTGATAAAATTCTTGCTGAGAAAGCGTGGCAACGATTTCAAGCGAGAGA 8175
| || ||||| | || | | ||| | ||| ||| |||| || |||| | |||
Sbjct 3578 GACATCGCGCTGACGATATATTAGGTGAAAGAGCCTGGAAACGTGTTAAAGCAAAAGA 3635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97934610146800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |