Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq20495 96.9 7e-16 seq16747 86.0 1e-12 >seq20495 Length=1873 Score = 96.9 bits (106), Expect = 7e-16 Identities = 238/357 (67%), Gaps = 22/357 (6%) Strand=Plus/Minus Query 7165 AATCCTTTCCGATACCTACCACTCTTCAATTCACTGTCTTTATCTATTACCACAAATCCA 7224 || ||||||| ||| | ||| | | | || | |||||| ||| || |||||| || Sbjct 476 AAACCTTTCCTATATCGTCCATTGTCTACAGCATTATCTTTACTTATAACAACAAATTCA 417 Query 7225 TATTTAT---TCCAACATGCCGAGCATAAATCTCTGAATGAGTTGTATGGCATGTC-CGT 7280 ||||||| |||||||| | | |||| ||| | | |||| | | ||| | | Sbjct 416 TATTTATCTTTCCAACATTT--ACTACAAATATCTAGA--AATTGTTTAAAA-GTCGCCT 362 Query 7281 ATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAG 7340 || ||||||||||| ||||||||| || | ||||||||||||||| || | | | Sbjct 361 AT-GACATGATCATTATAAATATGTTTAATATTCATTTCATCTTGTTTAAATATTATAAT 303 Query 7341 AAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGA-- 7398 || |||||||| || | || | | || |||||| ||||||||||||||| | | Sbjct 302 TAAATTTGCATTGTCACGTATTAAATATTTTGGTATTTTTGTATAAGTTTGACATACAAG 243 Query 7399 ----------TAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGAT 7448 ||||| ||| | || || || |||||||| || ||| || || | || Sbjct 242 TAGATACAAGTAGAAAGAGTCTATATGTTTATGACGACCCATACAAAAATAATCTCTTAT 183 Query 7449 GTGATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGC 7505 | ||||| ||||| ||||| ||||||||||| | || || || |||| Sbjct 182 TGCAGTTTGTTTATCACAGATTACATCATCAAATATCATTATTGAATTCGGTCTAGC 126 >seq16747 Length=6283 Score = 86.0 bits (94), Expect = 1e-12 Identities = 164/238 (69%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 7938 TCAACAATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGGTTATCAGTACTGCG 7997 ||||||| |||| ||||| | || |||||||||| |||| || ||||| | |||| Sbjct 2937 TCAACAACTTAATTAACAAT-TACCGGTTGAACTTCATTTACCTGGCTATCAATTTTGCG 2995 Query 7998 GTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAGGTATAAATCCTTTGG 8057 | || || ||||| | | || | || || |||||| |||||| ||||| || | Sbjct 2996 GACCAGGCACAAAACTTGTTGAGCGTTTGAAACGTGGTGATAAAGGTATTAATCCATTAG 3055 Query 8058 ACGCTGCGTGTAAGGAACACGATATAGCTTACTCAAAAAATCGTGAAAATTTGGAAGCTC 8117 | || ||||||| ||||||||||| || || || | || || || | |||||| || Sbjct 3056 ATGCAGCGTGTAGAGAACACGATATTGCATATTC-AGAATTC--AAAGACTTGGAAAATC 3112 Query 8118 GTCACGAGGCTGATAAAATTCTTGCTGAGAAAGCGTGGCAACGATTTCAAGCGAGAGA 8175 | || ||||| | || | | ||| | ||| ||| |||| || |||| | ||| Sbjct 3113 GACATCGCGCTGACGATATATTAGGTGAAAGAGCCTGGAAACGTGTTAAAGCAAAAGA 3170 Score = 86.0 bits (94), Expect = 1e-12 Identities = 164/238 (69%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 7938 TCAACAATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGGTTATCAGTACTGCG 7997 ||||||| |||| ||||| | || |||||||||| |||| || ||||| | |||| Sbjct 3402 TCAACAACTTAATTAACAAT-TACCGGTTGAACTTCATTTACCTGGCTATCAATTTTGCG 3460 Query 7998 GTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAGGTATAAATCCTTTGG 8057 | || || ||||| | | || | || || |||||| |||||| ||||| || | Sbjct 3461 GACCAGGCACAAAACTTGTTGAGCGTTTGAAACGTGGTGATAAAGGTATTAATCCATTAG 3520 Query 8058 ACGCTGCGTGTAAGGAACACGATATAGCTTACTCAAAAAATCGTGAAAATTTGGAAGCTC 8117 | || ||||||| ||||||||||| || || || | || || || | |||||| || Sbjct 3521 ATGCAGCGTGTAGAGAACACGATATTGCATATTC-AGAATTC--AAAGACTTGGAAAATC 3577 Query 8118 GTCACGAGGCTGATAAAATTCTTGCTGAGAAAGCGTGGCAACGATTTCAAGCGAGAGA 8175 | || ||||| | || | | ||| | ||| ||| |||| || |||| | ||| Sbjct 3578 GACATCGCGCTGACGATATATTAGGTGAAAGAGCCTGGAAACGTGTTAAAGCAAAAGA 3635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97934610146800