Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq22953 158 8e-34 seq5493 113 3e-20 seq20705 96.9 2e-15 >seq22953 Length=19288 Score = 158 bits (174), Expect = 8e-34 Identities = 165/215 (77%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 6161 GATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCC 6220 ||||| ||| | || ||||| || | |||| |||| |||||||| ||||||||||| Sbjct 4127 GATGGCCACCGTTAATGTAAACCGAAGTGTGACGGATATTTTCTACCGTTACAAAATGCC 4068 Query 6221 GCGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAAC 6278 |||| |||| |||||||||||||||||||| || || ||||| ||||| | || || Sbjct 4067 GCGC--CTGCAGGCCAAGGTCGAGGGTAAGGGCAATGGCATTAAGACCGTGCTCGTAAAT 4010 Query 6279 ATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGG 6338 ||| ||||||| || ||| | ||||| |||||||| || || || |||||||| || Sbjct 4009 ATGGCTGAAGTTGCGCGGGCTATTGGACGTCCTGCCACATATCCTACCAAATATTTTGGT 3950 Query 6339 TGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 |||||| | || || || ||||| || ||||| || Sbjct 3949 TGCGAATTGGGTGCCCAAACGCAATTCGATCATAA 3915 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 || || || || || ||||| || |||||| || ||| |||| || | | || Sbjct 2594 AATGAACGTTTTATTGTTAATGGTTCGCATGACGTCAATAAGTTGCAAGATCTTTTGGAT 2535 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || |||||||||||||||||| |||| | ||||||||| || || |||||| | | | Sbjct 2534 GGATTTATTCGCAAGTTTGTGTTGTGCCCGGAATGCGACAATCCTGAGACCAACTTGAGC 2475 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 || || |||| | | ||||| || || ||||| || ||||||| || || Sbjct 2474 GTATCGGCCAAAAACCAAACCATTTCCCAATCTTGCAAGGCATGCGGTTTTCACGGTCTC 2415 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 || | | |||||| |||| || ||||| |||||||||||||| Sbjct 2414 CTTAAGGTGAATCACAAAGTCAATACATTCATTGTGAAGAATCCTCCA 2367 >seq5493 Length=3029 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||| ||||||||||||||| |||||| | |||||||| Sbjct 1526 AAGCCGGTTCCCTTGGCTGTGTTTTCGCTAGATAGTACATAGGGAGAGTAGAAATCTCGT 1585 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| || |||||||||| ||||||||||||||||| Sbjct 1586 TAACCCATTCATGCGCGACACTAATTAGATGACGA 1620 >seq20705 Length=54059 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | || | |||||| || | || ||| |||||||| ||||| || || Sbjct 6859 ACCACCACGGAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGA 6918 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | || | || || |||||||| || ||||| || || ||||||||||| | || Sbjct 6919 CAGAGTGCGACCATCTTCCAATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGG 6978 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || ||||||||| ||| || || ||||| | || ||||| | ||| || Sbjct 6979 AATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGAC 7038 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || ||||| | ||| || ||||| |||||||| Sbjct 7039 CTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTAACGAAAATCTGCAT 7086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334807589820200