Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq22953 158 8e-34
seq5493 113 3e-20
seq20705 96.9 2e-15
>seq22953
Length=19288
Score = 158 bits (174), Expect = 8e-34
Identities = 165/215 (77%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 6161 GATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCC 6220
||||| ||| | || ||||| || | |||| |||| |||||||| |||||||||||
Sbjct 4127 GATGGCCACCGTTAATGTAAACCGAAGTGTGACGGATATTTTCTACCGTTACAAAATGCC 4068
Query 6221 GCGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAAC 6278
|||| |||| |||||||||||||||||||| || || ||||| ||||| | || ||
Sbjct 4067 GCGC--CTGCAGGCCAAGGTCGAGGGTAAGGGCAATGGCATTAAGACCGTGCTCGTAAAT 4010
Query 6279 ATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGG 6338
||| ||||||| || ||| | ||||| |||||||| || || || |||||||| ||
Sbjct 4009 ATGGCTGAAGTTGCGCGGGCTATTGGACGTCCTGCCACATATCCTACCAAATATTTTGGT 3950
Query 6339 TGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
|||||| | || || || ||||| || ||||| ||
Sbjct 3949 TGCGAATTGGGTGCCCAAACGCAATTCGATCATAA 3915
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
|| || || || || ||||| || |||||| || ||| |||| || | | ||
Sbjct 2594 AATGAACGTTTTATTGTTAATGGTTCGCATGACGTCAATAAGTTGCAAGATCTTTTGGAT 2535
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494
|| |||||||||||||||||| |||| | ||||||||| || || |||||| | | |
Sbjct 2534 GGATTTATTCGCAAGTTTGTGTTGTGCCCGGAATGCGACAATCCTGAGACCAACTTGAGC 2475
Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554
|| || |||| | | ||||| || || ||||| || ||||||| || ||
Sbjct 2474 GTATCGGCCAAAAACCAAACCATTTCCCAATCTTGCAAGGCATGCGGTTTTCACGGTCTC 2415
Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602
|| | | |||||| |||| || ||||| ||||||||||||||
Sbjct 2414 CTTAAGGTGAATCACAAAGTCAATACATTCATTGTGAAGAATCCTCCA 2367
>seq5493
Length=3029
Score = 113 bits (124), Expect = 3e-20
Identities = 82/95 (86%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||| ||||||||||||||| ||||||||||||||| |||||| | ||||||||
Sbjct 1526 AAGCCGGTTCCCTTGGCTGTGTTTTCGCTAGATAGTACATAGGGAGAGTAGAAATCTCGT 1585
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
||| || |||||||||| |||||||||||||||||
Sbjct 1586 TAACCCATTCATGCGCGACACTAATTAGATGACGA 1620
>seq20705
Length=54059
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | | || | |||||| || | || ||| |||||||| ||||| || ||
Sbjct 6859 ACCACCACGGAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGA 6918
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|| | || | || || |||||||| || ||||| || || ||||||||||| | ||
Sbjct 6919 CAGAGTGCGACCATCTTCCAATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGG 6978
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| || ||||||||| ||| || || ||||| | || ||||| | ||| ||
Sbjct 6979 AATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGAC 7038
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || || ||||| | ||| || ||||| ||||||||
Sbjct 7039 CTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTAACGAAAATCTGCAT 7086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334807589820200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |