Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq20705 120 3e-22 seq30232 102 7e-17 >seq20705 Length=54059 Score = 120 bits (132), Expect = 3e-22 Identities = 158/217 (73%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | || || || ||||||| | || || || | || Sbjct 7087 AATGCAGATTTTCGTTAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTCGAACCTTC 7028 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || || ||||| |||| |||| || | ||| |||||||| || ||||| || | Sbjct 7027 GGATACAATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAGGGAATTCCTCCAG 6972 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| || | || ||||| ||||||||||| ||||||| ||||||| || ||| | Sbjct 6971 ATCAACAACGTCTGATCTTTGCTGGCAAACAATTGGAAGATGGTCGCACTCTGTCCGACT 6912 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| ||||||||||| || || | || || ||||| Sbjct 6911 ACAACATTCAAAAAGAGTCTACATTGCACTTGGTGCT 6875 >seq30232 Length=15380 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| ||||||||||| | || Sbjct 15330 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCCTCA 15271 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | || || || | ||| ||||| ||||| ||||| || || || Sbjct 15270 GATACCATTGAGAATGTTAAGGCCAAGATTCA-AGACAAGGAAGGCATTCCCCCAGATCA 15212 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || ||||| || | || || | |||||| || ||| ||||| Sbjct 15211 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAA 15152 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| | ||||| ||||| Sbjct 15151 CATCCAGAAGGAGTCCACTTTGCATTTGGTGCT 15119 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| ||||||||||| | || Sbjct 15102 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCCTCA 15043 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| | ||| || ||| ||||| ||||| ||||| || || || Sbjct 15042 GATACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGATCAG 14983 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || || | |||||| || ||| ||||| Sbjct 14982 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGACGCACTTTGTCCGACTACAAC 14923 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| | || || ||||| Sbjct 14922 ATCCAGAAGGAGTCCACATTGCACTTGGTGCT 14891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433147383473000