Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq13173 264 1e-65
seq29908 122 1e-22
>seq13173
Length=15772
Score = 264 bits (292), Expect = 1e-65
Identities = 485/705 (69%), Gaps = 12/705 (2%)
Strand=Plus/Minus
Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985
||| || |||||||| ||||| | |||||||| | |||||||| || | | |||
Sbjct 14610 ATCGGCGACAAATTCAATGTATTCAGACATCAGTTTGCAATTCATGCCAATTAAGTTTAC 14551
Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045
|| | |||||| || | ||| || | ||||| || || || ||| | |||||| ||
Sbjct 14550 GGGCAAAGCGTCTGTGAGGAACTCCTGTTCGATGACTACAGCATCTGAAATGATTTCAAT 14491
Query 93046 TACTCT---ACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG-CAAAGT 93101
| | || | | || ||| | || | || | | |||| | ||||| |||| |
Sbjct 14490 AATGCGTTCACGACTGGGACGTT---GAACCAGATGCTGGAACATCA-GCACGGCAAAAT 14435
Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161
|| ||||| ||| ||||| ||||| || |||||||| ||| || | ||| || | |
Sbjct 14434 CGCAATGTAGACCCTCGTCGCGTGAAATTAACTCATTTGAGAAGGTAAGACCGGGCATAA 14375
Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221
| || || ||||| | |||||| |||||||| || || ||| ||| || || ||||| |
Sbjct 14374 GACCGCGCTTCTTCAACCAAAAGATTGAAGCGAAGCTGCCACTAAAGAAGATGCCTTCGA 14315
Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA--TCCATTT 93279
|||| ||||| || | ||| ||||| ||||||| || || || || || ||||
Sbjct 14314 CGGCGGCAAAAGCTATAATGCGTTCACCAAAATTGGCTGACTT--TGAAGAAATCCAAGC 14257
Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339
| ||||| || || || ||| | || | || || || || || || || ||
Sbjct 14256 GAGGGCCCAGTCCGCCTTGCGCTTTACTGCTGGCATAGTCTCAATCGCATTGAAAAGATA 14197
Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399
|| || | | | ||| ||||| || || ||||| | | |||||||| |||||
Sbjct 14196 GTCGCGTTGATGAGGATCACGTATATAGGTGTCGATAAGTACGCTGTACATTTCCGAATG 14137
Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459
|| |||||||| ||||||||||| || || ||||| | || || || |||||||| ||
Sbjct 14136 CACGTTCTCCATGGCAATTTGGAAGCCATAAAAACAACGTGCCTCGGTTATCTGCACCTC 14077
Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519
|| ||| | ||||| |||||||| ||||| || ||||| ||||| || || || ||
Sbjct 14076 CTGGCTAAAGCGTTCTACCAGATTTTCGTTGACAATGCCATCTGATGCGGCGAAGAATGC 14017
Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579
||| | ||| |||||| || ||||| || | || || |||||| | | ||
Sbjct 14016 CAACACATGAGATATAAAGTGACGCTCATTGTCAGTCAGGCGATTCCAATCTGTCATGTC 13957
Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624
|| || ||||| || |||||||| ||||| || |||||||| ||
Sbjct 13956 CTTGGACAGATCCACCTCTTCGACCGTCCAGAAAGATGCTTCGGC 13912
Score = 86.0 bits (94), Expect = 7e-12
Identities = 116/155 (75%), Gaps = 9/155 (6%)
Strand=Plus/Minus
Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801
||||||||| ||||| || ||||| |||||||| | ||||| || |||| || ||
Sbjct 14859 TTAGAAATCCGCATCAAGCGTAAAAACATTGTCCAAACGATTCG-ATG--TAACGCC-CA 14804
Query 92802 TTT-TTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCG 92860
| ||| || || || ||||||||||||||||||||||||||||| |||| || || |
Sbjct 14803 TGCGTTGATACTCGCCCACTTTTTTTTCAAAGAAATTTGTCTTTCCGTCCAGCGAAAT-G 14745
Query 92861 AATTCACT---AGTGATTGGATTCTTGGCGTTATA 92892
| || | ||||| ||| ||||| | |||||
Sbjct 14744 AGCTCCATGAAAGTGAATGGGTTCTTTGTATTATA 14710
>seq29908
Length=8822
Score = 122 bits (134), Expect = 1e-22
Identities = 89/101 (88%), Gaps = 3/101 (3%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 8238 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 8179
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATT 126363
|||||||||||||||||| ||||| ||||| | || ||||
Sbjct 8178 GTGGGTTCGAACCCCACATCTGAC-AATTAAAAGTGAAATT 8139
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556622742008000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |