Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq13173 264 1e-65 seq29908 122 1e-22 >seq13173 Length=15772 Score = 264 bits (292), Expect = 1e-65 Identities = 485/705 (69%), Gaps = 12/705 (2%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| || |||||||| ||||| | |||||||| | |||||||| || | | ||| Sbjct 14610 ATCGGCGACAAATTCAATGTATTCAGACATCAGTTTGCAATTCATGCCAATTAAGTTTAC 14551 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 || | |||||| || | ||| || | ||||| || || || ||| | |||||| || Sbjct 14550 GGGCAAAGCGTCTGTGAGGAACTCCTGTTCGATGACTACAGCATCTGAAATGATTTCAAT 14491 Query 93046 TACTCT---ACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG-CAAAGT 93101 | | || | | || ||| | || | || | | |||| | ||||| |||| | Sbjct 14490 AATGCGTTCACGACTGGGACGTT---GAACCAGATGCTGGAACATCA-GCACGGCAAAAT 14435 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 || ||||| ||| ||||| ||||| || |||||||| ||| || | ||| || | | Sbjct 14434 CGCAATGTAGACCCTCGTCGCGTGAAATTAACTCATTTGAGAAGGTAAGACCGGGCATAA 14375 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221 | || || ||||| | |||||| |||||||| || || ||| ||| || || ||||| | Sbjct 14374 GACCGCGCTTCTTCAACCAAAAGATTGAAGCGAAGCTGCCACTAAAGAAGATGCCTTCGA 14315 Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA--TCCATTT 93279 |||| ||||| || | ||| ||||| ||||||| || || || || || |||| Sbjct 14314 CGGCGGCAAAAGCTATAATGCGTTCACCAAAATTGGCTGACTT--TGAAGAAATCCAAGC 14257 Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339 | ||||| || || || ||| | || | || || || || || || || || Sbjct 14256 GAGGGCCCAGTCCGCCTTGCGCTTTACTGCTGGCATAGTCTCAATCGCATTGAAAAGATA 14197 Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 || || | | | ||| ||||| || || ||||| | | |||||||| ||||| Sbjct 14196 GTCGCGTTGATGAGGATCACGTATATAGGTGTCGATAAGTACGCTGTACATTTCCGAATG 14137 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 || |||||||| ||||||||||| || || ||||| | || || || |||||||| || Sbjct 14136 CACGTTCTCCATGGCAATTTGGAAGCCATAAAAACAACGTGCCTCGGTTATCTGCACCTC 14077 Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 || ||| | ||||| |||||||| ||||| || ||||| ||||| || || || || Sbjct 14076 CTGGCTAAAGCGTTCTACCAGATTTTCGTTGACAATGCCATCTGATGCGGCGAAGAATGC 14017 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579 ||| | ||| |||||| || ||||| || | || || |||||| | | || Sbjct 14016 CAACACATGAGATATAAAGTGACGCTCATTGTCAGTCAGGCGATTCCAATCTGTCATGTC 13957 Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || || ||||| || |||||||| ||||| || |||||||| || Sbjct 13956 CTTGGACAGATCCACCTCTTCGACCGTCCAGAAAGATGCTTCGGC 13912 Score = 86.0 bits (94), Expect = 7e-12 Identities = 116/155 (75%), Gaps = 9/155 (6%) Strand=Plus/Minus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||||||||| ||||| || ||||| |||||||| | ||||| || |||| || || Sbjct 14859 TTAGAAATCCGCATCAAGCGTAAAAACATTGTCCAAACGATTCG-ATG--TAACGCC-CA 14804 Query 92802 TTT-TTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCG 92860 | ||| || || || ||||||||||||||||||||||||||||| |||| || || | Sbjct 14803 TGCGTTGATACTCGCCCACTTTTTTTTCAAAGAAATTTGTCTTTCCGTCCAGCGAAAT-G 14745 Query 92861 AATTCACT---AGTGATTGGATTCTTGGCGTTATA 92892 | || | ||||| ||| ||||| | ||||| Sbjct 14744 AGCTCCATGAAAGTGAATGGGTTCTTTGTATTATA 14710 >seq29908 Length=8822 Score = 122 bits (134), Expect = 1e-22 Identities = 89/101 (88%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 8238 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 8179 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATT 126363 |||||||||||||||||| ||||| ||||| | || |||| Sbjct 8178 GTGGGTTCGAACCCCACATCTGAC-AATTAAAAGTGAAATT 8139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556622742008000