Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq20705 212 5e-50 seq30232 116 3e-21 seq13173 82.4 6e-11 >seq20705 Length=54059 Score = 212 bits (234), Expect = 5e-50 Identities = 711/1092 (65%), Gaps = 21/1092 (2%) Strand=Plus/Plus Query 128773 TGCGACTT--GTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGT 128830 |||||||| ||| || ||||| | |||||||| || || || || || ||||| || | Sbjct 37330 TGCGACTTTTGTCAACAGTAAACTGAATAGCGTTTGCAGCAGGTTTTGTTCGCAAGTAAT 37389 Query 128831 ACATGCCTGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGT 128890 |||| |||||||| | || ||||| | || | || |||| |||| | | | Sbjct 37390 ACATTCCTGTTTTAAGCCCAGCCTTCCATGAGTAAAAATGTATCGAAGTCAGTTTTCCAT 37449 Query 128891 AGGTGGGTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGAT 128950 || |||| | || ||||||||| || ||||||||||| ||||| | || | || Sbjct 37450 AGTTGGGCTCTGCCACGTGAATATTAAAGGACTGACTTTGATCTATAAAAGCACCCCTAT 37509 Query 128951 CGGCAGCCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTC 129010 | |||||||| || ||| || |||||||| || || ||||| | |||| Sbjct 37510 CAGCAGCCATTTTTATTGTTGATTTAACGGAGATTTCCCATACGGTCTTGTACAAGTCTC 37569 Query 129011 TCACGTGTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGT 129070 ||||||| || || |||||||| || | || | ||| || |||| || Sbjct 37570 GGACGTGTTGAGGAATAGAATCAATGTTTTGAATAGAACCACGGCTTGATATTATTTGGT 37629 Query 129071 TTCGCATCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCG--GTCAAGTATTTGTT 129128 | ||| | || | | | | || || ||||||| ||| || | || | || Sbjct 37630 TCTTCATGTCGTCATCCCATAGGTCCAATTCTGTCAAATC-TCGTAGT-AGGTGATGATT 37687 Query 129129 TATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTC 129188 || |||||| || ||||| | || || || | |||||| || ||| ||||||| Sbjct 37688 TACTACTTGGAATTCACCAGATAACACCCGTCTGGTGTAAATATTAGATGTGTACGGCTC 37747 Query 129189 AAACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCAC--G 129246 || |||||||| || || | |||||| || || | || || ||||| || | | Sbjct 37748 GAAGGATTCATTATTACCCATTATTTGGGCAGTGGATGCTGTAGGCATTGGTGCAATAAG 37807 Query 129247 CAAAGCGAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGT-CCAGTCCCA 129305 ||||| | || || | ||||| | ||||| | |||||| ||| | ||||||||| Sbjct 37808 CAAAG--AATTGCGAACGCCGTGTTTCTTAAT-TGACGTTTTAAGTGTATTCCAGTCCCA 37864 Query 129306 CATCGATGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACT 129365 | ||| || || | |||||||| ||| || || || ||||| ||| | || || Sbjct 37865 TAAATCTGTTGGAGTTTTATTCCACATGTCATACTGTAAAATACCTTTACTCACTGGGCT 37924 Query 129366 GGAAAAGTAGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGC 129425 | || | |||| ||| | ||| ||| | |||||||| || || | || Sbjct 37925 GCCTTCATATGTTTCGTAGTAGCCATGTTCTTGTGCGAGCTCGCAACTTGCCTCGAGCGC 37984 Query 129426 GCCAAAATAAATTGTTTCGGCAATTT--TGGTGTTCAACACTTTGGCCTGGTCGCTTTCG 129483 |||||||| ||||| ||| ||| | |||| | || | | |||| ||||||||| Sbjct 37985 TCCAAAATATATTGTCTCGAAAATCTGCTGGTTTAGAAGAGAT--GCCTCATCGCTTTCG 38042 Query 129484 TACGGCATA-CGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGG 129542 || || ||| |||| | | | || ||||| || || |||| ||| | || || || Sbjct 38043 TAAGG-ATACCGCATTAAGATCAGTGCATCGGCAAAGCCCTGAACACCAATTCCAATAGG 38101 Query 129543 TCGATGTTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAAT 129602 || || || || ||||||| ||| | ||||| ||||||| || || || Sbjct 38102 ACGGTGCCTTAAGTTCGATTTTTTAGCCTCTGGTAGAGGATAAAAGTTGATATCAATTAT 38161 Query 129603 TTTGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTC 129662 |||||| || || || ||||| || ||||| | ||| || ||| ||| | ||| | Sbjct 38162 TTTGTTCAAGTTTTTTGTAACAATCTTTGTTACATCTTTCAATTTTTTAAAGTCGTATT- 38220 Query 129663 GCCTACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACT 129722 | ||| |||||| ||||| || || || || ||||| || ||| | Sbjct 38221 --TTTTTTCGGGAGTGACAAACATATTGAGGGCTATGGAAGCTAAGTTGCAAACAGCAAT 38278 Query 129723 TTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCC 129782 ||| | | | ||||| |||||||||| || ||||| || ||||||||| || Sbjct 38279 TTCATCAGGGGCGGAATACTCCACAATTTCGGTACATAAATTGCTGCATTTAATGGTTCC 38338 Query 129783 CAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCC 129842 | | | |||||||||||| || || | ||||||| ||| ||| || || || || Sbjct 38339 AACGTTTTGTTGATTACTTTTGCGATTACAGGAATCTTTGAACAGCATATATGGAGTACC 38398 Query 129843 CGTTTCGACTTG 129854 ||||| ||||| Sbjct 38399 AGTTTCTACTTG 38410 Score = 143 bits (158), Expect = 2e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||| || |||| || || || |||| ||||| || ||| | | Sbjct 7086 ATGCAGATTTTCGTTAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTCGAACCTTCG 7027 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| || ||||| ||||| ||||| ||||| || |||||| Sbjct 7026 GATACAATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCAA 6967 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| |||||||| || || ||| ||||| | ||||| |||||| Sbjct 6966 CAACGTCTGATCTTTGCTGGCAAACAATTGGAAGATGGTCGCACTCTGTCCGACTACAAC 6907 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||||||||| || || Sbjct 6906 ATTCAAAAAGAGTCTAC 6890 >seq30232 Length=15380 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || ||||||| |||||||| || | Sbjct 15102 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCCTCA 15043 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || || ||||||||||| || ||||| || ||||| Sbjct 15042 GATACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGATCAG 14983 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || ||||| ||| | ||||| ||||| | ||||| |||||| Sbjct 14982 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGACGCACTTTGTCCGACTACAAC 14923 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || || || | || |||||||| || Sbjct 14922 ATCCAGAAGGAGTCCACATTGCACTTGGTGCTCCGTTTGCGCGGTGG 14876 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || ||||||| |||||||| || | Sbjct 15330 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCCTCA 15271 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || |||||||||||||| || ||||| || ||||| Sbjct 15270 GATACCATTGAGAATGTTAAGGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 15211 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || ||||| ||| | ||||| ||||| | ||||| |||||| Sbjct 15210 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 15151 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || ||||| | ||||| || Sbjct 15150 ATCCAGAAGGAGTCCACTTTGCATTTGGT 15122 >seq13173 Length=15772 Score = 82.4 bits (90), Expect = 6e-11 Identities = 112/155 (72%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 117059 ACGCATGATCGCTTTCGCCATTGTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCAT 117118 |||||| || ||||| ||| ||||||||||| |||||| ||||| || ||| | || Sbjct 14292 ACGCATTATAGCTTTTGCCGCCGTCGAAGGCATCTTCTTTAGTGGCAGCTTCGCTTCAAT 14351 Query 117119 ATTTTTTATCAAGACCAAAGGTCTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATC 117178 |||| | |||| ||||| ||||| ||||| || || || || ||||| || Sbjct 14352 CTTTTGGTTGAAGAAGCGCGGTCTTATGCCCGGTCTTACCTTCTCAAATGAGTTAATTTC 14411 Query 117179 GCGTGACGAAGGTTTACACACCGATTTTG-CGTGC 117212 || ||||| ||| |||| |||||||| ||||| Sbjct 14412 ACGCGACGAGGGTCTACATTGCGATTTTGCCGTGC 14446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419553052123000