Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq5260 102 7e-17 >seq5260 Length=19401 Score = 102 bits (112), Expect = 7e-17 Identities = 260/388 (67%), Gaps = 16/388 (4%) Strand=Plus/Minus Query 20204 TCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATAA 20263 ||||||| ||||| | ||| || || || | || ||||| |||||||| | ||| || Sbjct 12314 TCTCCCATGGTGTGCACAAAGTCGCCCGGCTTGAGGCCAGTCACATGAGCGATCATGTAG 12255 Query 20264 GTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTC 20323 || | | | ||| |||||||||||| || || |||||||||||||| | | Sbjct 12254 GTGAGCAACGCATACGAGGCAATGTTAAAGGGCACACCCAAACCCATGTCAGCGCTTCGT 12195 Query 20324 TGATACAGCTGACAGGAAAGCTC------ACCGTCAGCTACATAAAATTGACATAACAAG 20377 ||||| | ||||||||| ||||| | | | | ||||| || || || || Sbjct 12194 TGATATAACTGACAGGACAGCTCGCCACGATCCTGGGACACATAGAACTGGGCGAAGCAG 12135 Query 20378 TGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATT 20437 || || ||||| |||||||| | | || || ||||| ||| ||||||| || Sbjct 12134 TGGCAAGGCGGCAGCGCCATTTTTGGTATATCAATTGGATTCCAGGCAGACATAATAATC 12075 Query 20438 CTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGACAATTGGTCAAA 20493 | || ||| ||||| || ||| | ||| ||| || ||| || || || | Sbjct 12074 CGTCGATCTGATGGATTGTTGCGTATGGTGTCAAT-CAC-CTG-ACG-CAGCTGATCGAT 12019 Query 20494 CCCCTGGCCTGTATAGTCAGCATC-CGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACT 20552 |||| |||||||||||| | || | || | | || || |||||||| | ||| | Sbjct 12018 GCCCTTGCCTGTATAGTCGTCGTCACAGGTGC-CATATTGTGCGCCAAAGTGGCGCCATT 11960 Query 20553 GGAAACCGTAAACAGGTCCCAAATCCCC 20580 | ||||| || || ||||||||||| || Sbjct 11959 GAAAACCATAGACGGGTCCCAAATCGCC 11932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441184113128000