Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq20705 147 5e-30
seq30232 123 6e-23
>seq20705
Length=54059
Score = 147 bits (162), Expect = 5e-30
Identities = 152/198 (77%), Gaps = 6/198 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|||||||| || || ||||||| || ||||| || ||||| |||||||| || || |||
Sbjct 6896 TCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTCCAATTGTTTGCCAGCAAAG 6955
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||||||| ||||| |||| || ||||| ||||| ||||| || || ||||| ||
Sbjct 6956 ATCAGACGTTGTTG---ATCTGGAGGAATTCCCTCTTTGTCCTGAATCTTGGCTTTGACA 7012
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
||||| || | ||| | ||| || || || ||||| ||||| || || || |||||
Sbjct 7013 TTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTA 7072
Query 288460 ACGAATATCTGCATTATG 288477
||||| ||||||||||||
Sbjct 7073 ACGAAAATCTGCATTATG 7090
>seq30232
Length=15380
Score = 123 bits (136), Expect = 6e-23
Identities = 166/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || | ||| | ||| || || ||||| || |||||||
Sbjct 15104 CCACCACGGAGACGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 15163
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||||||||| || | || || || |||||||||| |||||| || |||||||
Sbjct 15164 AGAGTGCGTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTG---ATCTGGG 15220
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| ||||| || || || || || || || || || || || | ||| | ||
Sbjct 15221 GGAATGCCTTCCTTGTCTTGAATCTTGGCCTTAACATTCTCAATGGTATCTGAGGGCTCC 15280
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|||||||| ||||| ||||| || |||| ||||| ||||| ||||||||
Sbjct 15281 ACTTCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 15330
Score = 122 bits (134), Expect = 2e-22
Identities = 144/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| | ||||||||||| || | || || || ||||||
Sbjct 14912 TCCTTCTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCCTCCAGCTGCTTGCCAGCGAAG 14971
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| |||||| || ||||||| || ||||| || || ||||| || || || ||
Sbjct 14972 ATCAAACGCTGCTG---ATCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTAACA 15028
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | ||| | || |||||||| ||||| ||||| || |||| ||||||
Sbjct 15029 TTCTCAATGGTATCTGAGGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTG 15088
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 15089 ACGAAGATCTGCAT 15102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179137490187600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |