Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq30232 105 7e-18 seq2037 89.7 6e-13 seq20705 87.8 2e-12 seq8059 86.0 7e-12 seq21423 84.2 2e-11 seq16981 84.2 2e-11 seq4619 84.2 2e-11 seq21022 82.4 8e-11 seq17205 82.4 8e-11 seq15734 82.4 8e-11 seq200 82.4 8e-11 >seq30232 Length=15380 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||||||||| ||| |||||| || || ||||| || | |||||| || | Sbjct 15115 ACGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCC 15174 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || | |||||||| || | || | || ||||| Sbjct 15175 GTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTT 15234 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || | ||| | || | || | || | | || || | ||||| |||| |||| Sbjct 15235 GT-CTTGAATCTTGGCCTTAACATTCTCAATGGTATCTGAGGGCTCCACTTCGAGAGTGA 15293 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || | ||||| || ||||| ||||| Sbjct 15294 TGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 15330 >seq2037 Length=2420 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | ||| |||||||||||||||||||||||||||| ||||| ||| Sbjct 981 TTATCTCCCCGACGGGGAATTGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTAACC 922 Query 57063 ACTATACTACCGAGGAT 57079 ||||||||| ||||||| Sbjct 921 ACTATACTATCGAGGAT 905 >seq20705 Length=54059 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| |||||||| ||| |||||||| ||||| || | |||||| || | || || Sbjct 6877 CACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTC 6936 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 | || || ||||| || || || || || || || | || | | ||| |||||| | Sbjct 6937 CAATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCC-T 6995 Query 42119 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 || | || | ||||| | | | || || | ||| || || | |||||||| | Sbjct 6996 GAATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCT 7055 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||||||||| ||||| || || || |||||| Sbjct 7056 TGCCCGTTAGGGTCTTAACGAAAATCTGCATT 7087 >seq8059 Length=7765 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 6888 TTTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 6947 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 6948 CTATACTATCGAGGA 6962 >seq21423 Length=5018 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 3323 TTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 3264 Query 57064 CTATACTACCGAGGA--TTGAAT 57084 |||||||| |||||| |||||| Sbjct 3263 CTATACTATCGAGGATGTTGAAT 3241 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3873 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 3932 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 3933 ATACTATCGAGGA 3945 >seq16981 Length=8162 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 5031 TTTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 4972 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 4971 ACTATACTATCGAGGA 4956 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 5295 TTTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 5236 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 5235 ACTATACTATCGAGGA 5220 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 5886 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 5945 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 5946 ATACTATCGAGGA 5958 >seq4619 Length=19988 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 9339 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 9398 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 9399 TATACTATCGAGGA 9412 >seq21022 Length=1978 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1299 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1240 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 1239 TACTATCGAGGAT 1227 >seq17205 Length=2043 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 438 TTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 497 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 498 CTATACTATCGAGGA 512 >seq15734 Length=4880 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 333 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 274 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 273 ATACTATCGAGGA 261 >seq200 Length=40443 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 24486 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 24545 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 24546 TACTATCGAGGAT 24558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542980576528000