Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq30232 122 9e-23 seq20705 113 5e-20 >seq30232 Length=15380 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || |||||||| | ||||| | || | || || || || || |||||||| || | Sbjct 14876 CCACCGCGCAAACGGAGCACCAAGTGCAATGTGGACTCCTTCTGGATGTTGTAGTCGGAC 14935 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || ||||||||||| || | || | |||||||| || || ||| Sbjct 14936 AAAGTGCGTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGA 14995 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| || || ||| ||| ||| | ||||| || |||||| Sbjct 14996 ATGCCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCTGAGGGCTCCACT 15055 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||||||||| ||||| || || ||||| || ||||| Sbjct 15056 TCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 15102 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | || || || || || |||||||| || | | ||||| |||| Sbjct 15119 AGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCC 15178 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || | |||||||| || || ||||| ||||| || ||| Sbjct 15179 TCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCT 15238 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||||| || |||||||| | ||| | |||| Sbjct 15239 TGAATCTTGGCCTTAACATTCTCAATGGTATCTGAGGGCTCCACTTCGAGAGTGATGGTC 15298 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| || || ||||| || ||||| Sbjct 15299 TTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 15330 >seq20705 Length=54059 Score = 113 bits (124), Expect = 5e-20 Identities = 295/448 (66%), Gaps = 4/448 (1%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || || ||||||||||| |||||||| |||| || | ||||||||| | || Sbjct 38256 GAAGCTAAGTTGCAAACAGCAATTTCATCAGGGGCGGAATACTCCACAATTTCGGTACAT 38315 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 ||||| |||||| |||||| || | ||||| ||||| |||| || || | ||| Sbjct 38316 AAATTGCTGCATTTAATGGTTCCAACGTTTTGTTGATTACTTTTGCGATTACAGGAATCT 38375 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAA--ACA 154764 ||| ||| || || || || || ||||| ||||| | ||||| || | | || ||| Sbjct 38376 TTGAACAGCATATATGGAGTACCAGTTTCTACTTGAGACTCAATTATAG--CAAACCACA 38433 Query 154765 GACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGTT 154824 || | |||| | || | | | || || ||| ||||||| | || |||| Sbjct 38434 GAGATTGCGCTTTAATTGTTCGATTAGCACGGCCTTCCTGTTCATATTTGACATAGAGTT 38493 Query 154825 TTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAATG 154884 | ||||||||| | | || || || || ||||| | || |||||||||| Sbjct 38494 TATCAAACTCTTCTCCCCAAACATCATGTAAGCCAGGACATTTATGTGGGCACATCAATG 38553 Query 154885 ACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACA 154944 |||| || || || || || |||||||| | ||| || | ||| ||||| || | Sbjct 38554 ACCAATCCTCATTAGCTTCAACACGCTTCATAAAAAGATCTGGTATCCATAAAGCATAGA 38613 Query 154945 ACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCAT 155004 | | ||| || || || || || ||| ||||| ||||| | ||||| ||| Sbjct 38614 AAAGATCTCGGGCACGATTTTCCTCCTTGCCAGTGTTTTTTTTTAAGTCTAAAAATTCAA 38673 Query 155005 ATATGTCGGCGTGCCACGGCTCTAAATA 155032 | | ||| | ||||| || |||||||| Sbjct 38674 ACACGTCTGAATGCCAAGGTTCTAAATA 38701 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||||||||||||||| || | | ||||| | ||||| | || ||||| Sbjct 6890 GTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTCCAATTGTTTGCCA 6949 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || || || || || ||||||||||| ||||| || || | | || ||||| Sbjct 6950 GCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTG-AATCTTGGCTTT 7008 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | |||||| | || || || | || | ||||||||| || | || Sbjct 7009 GACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTGCCCGTTAGGGT 7068 Query 64426 TTTTACGAAAATTTGCATT 64444 || |||||||| |||||| Sbjct 7069 CTTAACGAAAATCTGCATT 7087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499431201848000