Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq20705 102 8e-17 >seq20705 Length=54059 Score = 102 bits (112), Expect = 8e-17 Identities = 210/311 (68%), Gaps = 6/311 (2%) Strand=Plus/Minus Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 || || |||| || || ||||||||||| | || ||| | | ||||| | ||| | Sbjct 38878 ATATCCAAATCAGCTGGTGGAATCGGGATAAACGTTCACTGCATTCGTGCTAAAGGTACT 38819 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 | ||| | || || ||||| || || || || | || || ||||| | || || ||| Sbjct 38818 TCGATCTGTGGAACTAATGGAACTTCAAATGGTTTGGTGCCAATGCTAAGAGTTTTTAAC 38759 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 |||| ||| ||||| || |||||||| ||||| | | | ||| | || || | ||| Sbjct 38758 AACGTGGCTCGCTATGTTGACCAGGGAGGTGGAAAGCGTCCTGGTGCCTTTGCAATTTAT 38699 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | || || ||||| | |||||| | || | ||| | ||| ||| ||||| Sbjct 38698 TTAGAACCTTGGCATTCAGACGTGTTTGAATTTTTAGACTTAAAAAAAAACACTGGCAAG 38639 Query 94252 GATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || ||| | | ||| |||| || ||||| ||| | ||| | ||||| ||||||||| Sbjct 38638 GA---GGAAAATCGTGCCCGAGATCTTTTCTATGCTTTATGGATACCAGATCTTTTTATG 38582 Query 94309 AAACGCGTCGA 94319 || || || || Sbjct 38581 AAGCGTGTTGA 38571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494511705832000