Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq20705 102 8e-17
>seq20705
Length=54059
Score = 102 bits (112), Expect = 8e-17
Identities = 210/311 (68%), Gaps = 6/311 (2%)
Strand=Plus/Minus
Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071
|| || |||| || || ||||||||||| | || ||| | | ||||| | ||| |
Sbjct 38878 ATATCCAAATCAGCTGGTGGAATCGGGATAAACGTTCACTGCATTCGTGCTAAAGGTACT 38819
Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131
| ||| | || || ||||| || || || || | || || ||||| | || || |||
Sbjct 38818 TCGATCTGTGGAACTAATGGAACTTCAAATGGTTTGGTGCCAATGCTAAGAGTTTTTAAC 38759
Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191
|||| ||| ||||| || |||||||| ||||| | | | ||| | || || | |||
Sbjct 38758 AACGTGGCTCGCTATGTTGACCAGGGAGGTGGAAAGCGTCCTGGTGCCTTTGCAATTTAT 38699
Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251
| || || ||||| | |||||| | || | ||| | ||| ||| |||||
Sbjct 38698 TTAGAACCTTGGCATTCAGACGTGTTTGAATTTTTAGACTTAAAAAAAAACACTGGCAAG 38639
Query 94252 GATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308
|| ||| | | ||| |||| || ||||| ||| | ||| | ||||| |||||||||
Sbjct 38638 GA---GGAAAATCGTGCCCGAGATCTTTTCTATGCTTTATGGATACCAGATCTTTTTATG 38582
Query 94309 AAACGCGTCGA 94319
|| || || ||
Sbjct 38581 AAGCGTGTTGA 38571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494511705832000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |