Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq20705 208 7e-49
>seq20705
Length=54059
Score = 208 bits (230), Expect = 7e-49
Identities = 927/1461 (63%), Gaps = 48/1461 (3%)
Strand=Plus/Minus
Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAA 123293
||||| |||||| || |||| | || | || |||||||| || || ||
Sbjct 38776 ATGCTAAGAGTTTTTAACAACGTGGCTCGCTATGTTGACCAGGGAGGTGGAAAGCGTCCT 38717
Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353
|| || | || || ||| ||||||| ||||| || |||| || |||||| | |||
Sbjct 38716 GGTGCCTTTGCAATTTATTTAGAACCTTGGCATTCAGACGTGTTTGAATTTTTAGACTTA 38657
Query 123354 AAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTA 123413
||| |||| || ||| ||||| ||||| ||| | || || ||||||||| ||
Sbjct 38656 AAAAAAAACACTGGCAAGGAGGAAAATCGTGCCCGAGATCTTTTCTATGCTTTATGGATA 38597
Query 123414 CCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGAT 123473
|| ||| | |||||| || || ||| | | | ||||| | ||||| || ||
Sbjct 38596 CCAGATCTTTTTATGAAGCGTGTTGAAGCTAATGAGGATTGGTCATTGATGTGCCCACAT 38537
Query 123474 CGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATAC 123533
||||| ||||| || |||| || | ||||||| | | || | ||||
Sbjct 38536 AAATGTCCTGGCTTACATGATGTTTGGGGAGAAGAGTTTGATAAACTCTATGTCAAATAT 38477
Query 123534 GAGCGCGAAGGC------AAACAGGTTAGTCAGGTTCCGGCAC-GTGATTTGTTCAAATT 123586
|| | |||||| || | | | | | | | | ||| |||| | ||||
Sbjct 38476 GAACAGGAAGGCCGTGCTAATCGAACAATTAAAGCGCAATCTCTGTGGTTTGCTATAATT 38417
Query 123587 TATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAA 123646
| | || |||| ||||| || || || || ||||| | |||||| |||| ||
Sbjct 38416 GAGTCTC-------AAGTAGAAACTGGTACTCCATATATGCTGTTCAAAGATTCCTGTAA 38364
Query 123647 CAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706
| |||| ||||| ||| | ||||| || ||||| || ||| | || |||||||
Sbjct 38363 TCGCAAAAGTAATCAACAAAACGTTGGAACCATTAAATGCAGCAATTTATGTACCGAAAT 38304
Query 123707 TATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA 123766
| | || || || | ||| || | || || || || || ||||| || | | ||
Sbjct 38303 TGTGGAGTATTCCGCCCCTGATGAAATTGCTGTTTGCAACTTAGCTTCCATAGCCCTCAA 38244
Query 123767 TCGTTGCGTCG---------AAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAAC 123817
| | ||| |||| || ||||| ||| | ||| ||||
Sbjct 38243 TATGTTTGTCACTCCCGAAAAAAAATACGACTTTAAA----AAAT--TGAAAGATGTAAC 38190
Query 123818 AAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGA 123877
||| | ||| ||| || ||||||||||| || ||| | || ||||||||| | ||
Sbjct 38189 AAAGATTGTTACAAAAAACTTGAACAAAATAATTGATATCAACTTTTATCCTCTACCAGA 38130
Query 123878 AGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGA 123937
|| || || || | ||| | || | ||| | || |||| || || |||||
Sbjct 38129 GGCTAAAAAATCGAACTTAAGGCACCGTCCTATTGGAATTGGTGTTCAGGGCTTTGCCGA 38070
Query 123938 CGC---GTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATAC 123994
|| | | |||||| | || || ||||||||||| || ||| | || ||
Sbjct 38069 TGCACTGATCTTAATGCGGT--AT-CCTTACGAAAGCGATGAGGCATCTCTTCTAAACCA 38013
Query 123995 GCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAAT 124054
||| || ||| ||||| |||| || || | ||||| || ||||| || || ||
Sbjct 38012 GCAGATTTTCGAGACAATATATTTTGGAGCGCTCGAGGCAAGTTGCGAGCTCGCACAAGA 37953
Query 124055 TCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGA 124114
|| ||| ||||||| || | |||||||| | ||| ||||||||| ||||| ||
Sbjct 37952 ACATGGCTACTACGAAACATATGAAGGCAGCCCAGTGAGTAAAGGTATTTTACAGTATGA 37893
Query 124115 CATGTGGAATGCTACACCGACAAATTTGTGGGACTGG-AGCGTTTTAAAACAACGCATAT 124173
|||||||||| || || ||| |||| ||||||||| | ||||||| | ||
Sbjct 37892 CATGTGGAATAAAACTCCAACAGATTTATGGGACTGGAATACACTTAAAACGTC-AATTA 37834
Query 124174 CGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTC 124233
|| ||||| | || || || || | | || ||||| || ||| ||||||| |
Sbjct 37833 AGAAACACGGCGTTCGCAATTCTTTGCTTATTGCACCAATGCCTACAGCATCCACTGCCC 37774
Query 124234 AAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAG 124293
|||| | || || || |||||||||||||||| ||| ||| | ||| |||| |
Sbjct 37773 AAATAATGGGTAATAATGAATCCTTCGAGCCGTACACATCTAATATTTACACCAGACGGG 37714
Query 124294 TGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAA 124353
||||| | || || || ||||| |||||||||| | | || ||| | ||
Sbjct 37713 TGTTATCTGGTGAATTCCAAGTAGTAAATCATCACCTACTACGAGATTTGACAGAATTGG 37654
Query 124354 ATTTGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCA 124413
| | | ||||| ||||| ||| |||| || | | |||| | || ||
Sbjct 37653 ACCTATGGGATGACGACATGAAGAACCAAATAATATCAAGCCGTGGTTCTATTCAAAACA 37594
Query 124414 TCGCTTCGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAA 124469
| | ||| ||||| |||||||| | ||||||| ||||| |||||||| | |
Sbjct 37593 TTGATTCTATTCCTCAACACGTCCGAGACTTGTACAAGACCGTATGGGAAATCTCCGTTA 37534
Query 124470 AATAAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCT 124529
||| ||| ||| ||||||| | || | || || | | ||||||||||| ||
Sbjct 37533 AATCAAC----AATAAAAATGGCTGCTGATAGGGGTGCTTTTATAGATCAAAGTCAGTCC 37478
Query 124530 TTTAACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCG 124589
||||| | || || || |||| ||| | |||| ||||| | || |
Sbjct 37477 TTTAATATTCACGTGGCAGAGCCCAACTATGGAAAACTGACTTCGATACATTTTTACTCA 37418
Query 124590 TGGAGCAGCGGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCC 124649
|||| || || ||||| || ||||||||||| |||| ||||| || || | ||
Sbjct 37417 TGGAAGGCTGGGCTTAAAACAGGAATGTATTACTTGCGAACAAAACCTGCTGCAAACGCT 37358
Query 124650 ATTCAATTTACCGTCGACAAA 124670
||||| ||||| || ||||||
Sbjct 37357 ATTCAGTTTACTGTTGACAAA 37337
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | | ||| | |||| || || || ||||| || || || ||| |
Sbjct 6860 CCACCACGGAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCG--G 6917
Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231
|| | | || ||| ||||||||||| || || | |||| ||||| || || || |
Sbjct 6918 ACAGAGTGCGACCATCTTCCAATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAG 6977
Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291
|||| || ||||| || ||||| || ||||| ||| | || || |||| ||||
Sbjct 6978 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGA 7037
Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| || || || | || ||||| ||||| || || || ||||| |||||
Sbjct 7038 CCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTAACGAAAATCTGCAT 7086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451809968632000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |