Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq20705 208 7e-49 >seq20705 Length=54059 Score = 208 bits (230), Expect = 7e-49 Identities = 927/1461 (63%), Gaps = 48/1461 (3%) Strand=Plus/Minus Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAA 123293 ||||| |||||| || |||| | || | || |||||||| || || || Sbjct 38776 ATGCTAAGAGTTTTTAACAACGTGGCTCGCTATGTTGACCAGGGAGGTGGAAAGCGTCCT 38717 Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353 || || | || || ||| ||||||| ||||| || |||| || |||||| | ||| Sbjct 38716 GGTGCCTTTGCAATTTATTTAGAACCTTGGCATTCAGACGTGTTTGAATTTTTAGACTTA 38657 Query 123354 AAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTA 123413 ||| |||| || ||| ||||| ||||| ||| | || || ||||||||| || Sbjct 38656 AAAAAAAACACTGGCAAGGAGGAAAATCGTGCCCGAGATCTTTTCTATGCTTTATGGATA 38597 Query 123414 CCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGAT 123473 || ||| | |||||| || || ||| | | | ||||| | ||||| || || Sbjct 38596 CCAGATCTTTTTATGAAGCGTGTTGAAGCTAATGAGGATTGGTCATTGATGTGCCCACAT 38537 Query 123474 CGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATAC 123533 ||||| ||||| || |||| || | ||||||| | | || | |||| Sbjct 38536 AAATGTCCTGGCTTACATGATGTTTGGGGAGAAGAGTTTGATAAACTCTATGTCAAATAT 38477 Query 123534 GAGCGCGAAGGC------AAACAGGTTAGTCAGGTTCCGGCAC-GTGATTTGTTCAAATT 123586 || | |||||| || | | | | | | | | ||| |||| | |||| Sbjct 38476 GAACAGGAAGGCCGTGCTAATCGAACAATTAAAGCGCAATCTCTGTGGTTTGCTATAATT 38417 Query 123587 TATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAA 123646 | | || |||| ||||| || || || || ||||| | |||||| |||| || Sbjct 38416 GAGTCTC-------AAGTAGAAACTGGTACTCCATATATGCTGTTCAAAGATTCCTGTAA 38364 Query 123647 CAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706 | |||| ||||| ||| | ||||| || ||||| || ||| | || ||||||| Sbjct 38363 TCGCAAAAGTAATCAACAAAACGTTGGAACCATTAAATGCAGCAATTTATGTACCGAAAT 38304 Query 123707 TATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA 123766 | | || || || | ||| || | || || || || || ||||| || | | || Sbjct 38303 TGTGGAGTATTCCGCCCCTGATGAAATTGCTGTTTGCAACTTAGCTTCCATAGCCCTCAA 38244 Query 123767 TCGTTGCGTCG---------AAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAAC 123817 | | ||| |||| || ||||| ||| | ||| |||| Sbjct 38243 TATGTTTGTCACTCCCGAAAAAAAATACGACTTTAAA----AAAT--TGAAAGATGTAAC 38190 Query 123818 AAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGA 123877 ||| | ||| ||| || ||||||||||| || ||| | || ||||||||| | || Sbjct 38189 AAAGATTGTTACAAAAAACTTGAACAAAATAATTGATATCAACTTTTATCCTCTACCAGA 38130 Query 123878 AGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGA 123937 || || || || | ||| | || | ||| | || |||| || || ||||| Sbjct 38129 GGCTAAAAAATCGAACTTAAGGCACCGTCCTATTGGAATTGGTGTTCAGGGCTTTGCCGA 38070 Query 123938 CGC---GTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATAC 123994 || | | |||||| | || || ||||||||||| || ||| | || || Sbjct 38069 TGCACTGATCTTAATGCGGT--AT-CCTTACGAAAGCGATGAGGCATCTCTTCTAAACCA 38013 Query 123995 GCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAAT 124054 ||| || ||| ||||| |||| || || | ||||| || ||||| || || || Sbjct 38012 GCAGATTTTCGAGACAATATATTTTGGAGCGCTCGAGGCAAGTTGCGAGCTCGCACAAGA 37953 Query 124055 TCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGA 124114 || ||| ||||||| || | |||||||| | ||| ||||||||| ||||| || Sbjct 37952 ACATGGCTACTACGAAACATATGAAGGCAGCCCAGTGAGTAAAGGTATTTTACAGTATGA 37893 Query 124115 CATGTGGAATGCTACACCGACAAATTTGTGGGACTGG-AGCGTTTTAAAACAACGCATAT 124173 |||||||||| || || ||| |||| ||||||||| | ||||||| | || Sbjct 37892 CATGTGGAATAAAACTCCAACAGATTTATGGGACTGGAATACACTTAAAACGTC-AATTA 37834 Query 124174 CGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTC 124233 || ||||| | || || || || | | || ||||| || ||| ||||||| | Sbjct 37833 AGAAACACGGCGTTCGCAATTCTTTGCTTATTGCACCAATGCCTACAGCATCCACTGCCC 37774 Query 124234 AAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAG 124293 |||| | || || || |||||||||||||||| ||| ||| | ||| |||| | Sbjct 37773 AAATAATGGGTAATAATGAATCCTTCGAGCCGTACACATCTAATATTTACACCAGACGGG 37714 Query 124294 TGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAA 124353 ||||| | || || || ||||| |||||||||| | | || ||| | || Sbjct 37713 TGTTATCTGGTGAATTCCAAGTAGTAAATCATCACCTACTACGAGATTTGACAGAATTGG 37654 Query 124354 ATTTGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCA 124413 | | | ||||| ||||| ||| |||| || | | |||| | || || Sbjct 37653 ACCTATGGGATGACGACATGAAGAACCAAATAATATCAAGCCGTGGTTCTATTCAAAACA 37594 Query 124414 TCGCTTCGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAA 124469 | | ||| ||||| |||||||| | ||||||| ||||| |||||||| | | Sbjct 37593 TTGATTCTATTCCTCAACACGTCCGAGACTTGTACAAGACCGTATGGGAAATCTCCGTTA 37534 Query 124470 AATAAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCT 124529 ||| ||| ||| ||||||| | || | || || | | ||||||||||| || Sbjct 37533 AATCAAC----AATAAAAATGGCTGCTGATAGGGGTGCTTTTATAGATCAAAGTCAGTCC 37478 Query 124530 TTTAACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCG 124589 ||||| | || || || |||| ||| | |||| ||||| | || | Sbjct 37477 TTTAATATTCACGTGGCAGAGCCCAACTATGGAAAACTGACTTCGATACATTTTTACTCA 37418 Query 124590 TGGAGCAGCGGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCC 124649 |||| || || ||||| || ||||||||||| |||| ||||| || || | || Sbjct 37417 TGGAAGGCTGGGCTTAAAACAGGAATGTATTACTTGCGAACAAAACCTGCTGCAAACGCT 37358 Query 124650 ATTCAATTTACCGTCGACAAA 124670 ||||| ||||| || |||||| Sbjct 37357 ATTCAGTTTACTGTTGACAAA 37337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| | |||| || || || ||||| || || || ||| | Sbjct 6860 CCACCACGGAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCG--G 6917 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | || ||| ||||||||||| || || | |||| ||||| || || || | Sbjct 6918 ACAGAGTGCGACCATCTTCCAATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAG 6977 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 |||| || ||||| || ||||| || ||||| ||| | || || |||| |||| Sbjct 6978 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGA 7037 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || | || ||||| ||||| || || || ||||| ||||| Sbjct 7038 CCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTAACGAAAATCTGCAT 7086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451809968632000