Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq13173 304 1e-77 seq30232 123 2e-23 seq20705 114 1e-20 >seq13173 Length=15772 Score = 304 bits (336), Expect = 1e-77 Identities = 508/722 (70%), Gaps = 12/722 (2%) Strand=Plus/Minus Query 132712 AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTA 132771 || || || ||||| | ||||| || || || ||||||| ||||| || |||||| Sbjct 14627 AGCTCTACCAGCAGACGATCGGCGACAAATTCAATGTATTCAGACATCAGTTTGCAATTC 14568 Query 132772 AGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCG 132831 | || | | || |||| || || ||||| || || |||||| | || || Sbjct 14567 ATGCCAATTAAGTTTACGGGCAAAGCGTCTGTGAGGAACTCCTGTTCGATGACTACAGCA 14508 Query 132832 TCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATC 132891 || | | |||||| ||| ||| | || || ||||| |||| ||||| ||||||| Sbjct 14507 TCTGAAATGATTTCAATAATGCGTTCACGACTGGGACGTTGAACCAGATGCTGGAACATC 14448 Query 132892 AAGCAAG-CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 | ||| | |||| |||||||| | |||||||| | ||||| | || || ||| || Sbjct 14447 A-GCACGGCAAAATCGCAATGTAGACCCTCGTCGCGTGAAATTAACTCATTTGAGAAGGT 14389 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 | |||||||| || ||||| || || | |||||| || | ||||| ||||| ||| Sbjct 14388 AAGACCGGGCATAAGACCGCGCTTCTTCAACCAAAAGATTGAAGCGAAGCTGCCACTAAA 14329 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT-CTTTGC 133069 ||||| ||| |||||||| || ||||| | | ||| || || || ||||| ||||| Sbjct 14328 GAAGATGCCTTCGACGGCGGCAAAAGCTATAATGCGTTCACCAAAATTGGCTGACTTTGA 14269 Query 133070 TGGCGATCCA-GCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATG 133128 | ||||| ||| || ||||| || ||||| || || ||||| || || || Sbjct 14268 AGAA-ATCCAAGCG-AGGGCCCAGTCCGCCTTGCGCTTTACTGCTGGCATAGTCTCAATC 14211 Query 133129 GCGTTCAACAAACGGAGTTTCTCTTCCGAGGA--ACGCACGTAGGTGTCGATGAGGGTCG 133186 || || || | | ||| | | ||||| ||| | ||||||||||| || Sbjct 14210 GCATTGAAAAGAT--AGTCGCGTTGATGAGGATCACGTATATAGGTGTCGATAAGTACGC 14153 Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCT 133246 ||||||||||| || |||||||||||||| ||||| ||||| ||||| || || |||| Sbjct 14152 TGTACATTTCCGAATGCACGTTCTCCATGGCAATTTGGAAGCCATAAAAACAACGTGCCT 14093 Query 133247 CGACCACCTGCACTTCTTGAGCGAAA-CGCTCGACCAGATTTTCGTTGACGATGCCGTCG 133305 || | |||||| || || || ||| || || ||||||||||||||||| ||||| || Sbjct 14092 CGGTTATCTGCACCTCCTG-GCTAAAGCGTTCTACCAGATTTTCGTTGACAATGCCATCT 14034 Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC 133365 |||||||| || |||| ||| || || || || ||||| ||||| ||| ||| Sbjct 14033 GATGCGGCGAAGAATGCCAACACATGAGATATAAAGTGACGCTCATTGTCAGTCAGGCGA 13974 Query 133366 TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 | ||| || | ||||||||||||| |||||||| ||||| ||||| || || || ||| Sbjct 13973 TTCCAATCTGTCATGTCCTTGGACAGATCCACCTCTTCGACCGTCCAGAAAGATGCTTCG 13914 Query 133426 GC 133427 || Sbjct 13913 GC 13912 >seq30232 Length=15380 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| |||||||| |||| || ||| || | Sbjct 15102 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCCTCA 15043 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| | || |||| ||||| || || |||||| | || || Sbjct 15042 GATACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGATCAG 14983 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| |||||||| |||| ||||| | |||||||||| Sbjct 14982 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGACGCACTTTGTCCGACTACAAC 14923 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || |||| |||||||| |||||| | || ||| Sbjct 14922 ATCCAGAAGGAGTCCACATTGCACTTGGTGCTCCGTTTGCGCGGTGGC 14875 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| |||||||| |||| || ||| || | Sbjct 15330 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCCTCA 15271 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| | || || | ||||| || || |||||| | || || Sbjct 15270 GATACCATTGAGAATGTTAAGGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 15211 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| |||||||| |||| ||||| || |||||||||| Sbjct 15210 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 15151 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || ||||||||||||| ||| Sbjct 15150 ATCCAGAAGGAGTCCACTTTGCATTTGGTGCTCCGT 15115 >seq20705 Length=54059 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || |||||||| ||||||||| | || ||||| | | Sbjct 7087 AATGCAGATTTTCGTTAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTCGAACCTTC 7028 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | ||| | |||| || || | ||||||||||||||||| | || || Sbjct 7027 GGATACAATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCA 6968 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | || |||||||| |||| || | ||||| || ||||||||| Sbjct 6967 ACAACGTCTGATCTTTGCTGGCAAACAATTGGAAGATGGTCGCACTCTGTCCGACTACAA 6908 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| ||||| || | || |||| |||||||| || Sbjct 6907 CATTCAAAAAGAGTCTACATTGCACTTGGTGCTCCG 6872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499958976128000