Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2802 129 2e-24 seq14783 120 1e-21 seq20705 116 1e-20 seq4982 100 1e-15 >seq2802 Length=25935 Score = 129 bits (142), Expect = 2e-24 Identities = 250/366 (68%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 ||||| ||||| |||||||| | ||||| | || ||||| ||||| || ||| Sbjct 20201 TTTGCCCCTGAGGAAATTTCTGCCATGGTGTTGGGCAAGATGAAGGAAACTGCCGAAGCC 20260 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 ||| |||| ||| || |||| || | || || || || || |||||||||||| Sbjct 20261 TATCTTGGCAAGAAAGTCACACATGCTGTCGTCACAGTCCCTGCCTACTTCAATGATGCA 20320 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 || || ||||| || || ||||| || ||||||||| || | || | || || || Sbjct 20321 CAGCGTCAAGCTACCAAGGATGCCGGTGTCATTGCTGGTCTACAGGTGATGCGCATCATC 20380 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477 || ||||| || |||||||| | || ||||| || ||| || ||||| | || Sbjct 20381 AACGAACCCACTGCAGCTGCCATTGCCTATGGTCT-GGACAA--GAAAGA---GGGCGAG 20434 Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT 451537 ||||| | | || || ||||| || || || || ||| || | || ||||| Sbjct 20435 AAAAACGTGCTTGTGTTCGATTTGGGCGGCGGTACCTTCGATGTCTCCCTGCTGACAATT 20494 Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGAT 451597 || |||| || || || || || || ||||||||||||||| | || ||||||||| Sbjct 20495 GACAATGGTGTGTTCGAGGTGGTAGCCACTAATGGTGATACTCATTTGGGCGGTGAAGAT 20554 Query 451598 ATTGAT 451603 | ||| Sbjct 20555 TTCGAT 20560 >seq14783 Length=131557 Score = 120 bits (132), Expect = 1e-21 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 |||||||| ||||| || || ||| || | | || |||| | |||||| | ||| Sbjct 77929 AAAATGAAGGAAACGGCTGAGGCGTATCTTAATACGCCCGTTAAGAACGCAGTAGTGACT 77870 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || ||||| ||||| ||| ||||||| || ||||| || ||||| || || |||||| Sbjct 77869 GTGCCTGCTTACTTCAACGATTCACAACGACAGGCAACAAAGGATGCTGGTCAAATTGCT 77810 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||||| ||||| | || ||||||||||||| ||||| || || | || ||||| Sbjct 77809 GGTTTGAATGTGTTGCGTGTTATTAATGAACCCACAGCGGCGGCGTTGGCCTATGG 77754 >seq20705 Length=54059 Score = 116 bits (128), Expect = 1e-20 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 |||||| | ||||||||||| || || || || || || || || ||||| || ||| | Sbjct 7089 ATAATGCAGATTTTCGTTAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTCGAACCT 7030 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 || |||| || ||| | | ||| || ||||| || || || ||||||||||| ||| Sbjct 7029 TCGGATACAATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGAT 6970 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 ||||||||| | || || | || |||||| | |||||||| | ||| || | || || Sbjct 6969 CAACAACGTCTGATCTTTGCTGGCAAACAATTGGAAGATGGTCGCACTCTGTCCGACTAC 6910 Query 391227 AATATTGATAAGGATGCAACACTTCACTTAGT 391258 || ||| | || || | ||| | ||||| || Sbjct 6909 AACATTCAAAAAGAGTCTACATTGCACTTGGT 6878 >seq4982 Length=30196 Score = 100 bits (110), Expect = 1e-15 Identities = 178/260 (68%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || ||||| | ||| | || | || |||| ||||| || || || || || || Sbjct 20201 GGCAAGCCAAAGATTGAGGTTACATACAAAGATGAAAAGAAGACCTTCTTCCCCGAGGAG 20260 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || || ||||||||||| || ||||| || || || || || | || | Sbjct 20261 ATCTCCTCCATGGTTCTTACCAAGATGAAGGAGACTGCCGAGGCTTACCTGGGCAAGACG 20320 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || || |||| || || ||||| || ||||| ||||| ||| |||| || || || || Sbjct 20321 GTGACCAATGCCGTCATCACTGTGCCTGCTTACTTCAACGATTCACAGCGTCAGGCGACC 20380 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || ||||| || || || ||||||||||| | || ||||| || || ||||| || Sbjct 20381 AAGGATGCTGGTACCATCGCCGGTTTAAATGTGTTGCGTATTATAAACGAGCCTACGGCC 20440 Query 451433 GCTGCTCTAGCATATGGACT 451452 ||||| | || ||||| || Sbjct 20441 GCTGCCATTGCTTATGGTCT 20460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974852664893600