Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq20705 421 7e-113
seq13173 203 4e-47
>seq20705
Length=54059
Score = 421 bits (466), Expect = 7e-113
Identities = 1225/1888 (65%), Gaps = 19/1888 (1%)
Strand=Plus/Plus
Query 46963 ATAATTTGTCTTTT-TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAA 47021
||||| | ||||| || |||||||||| ||| | || || | ||||||||| ||
Sbjct 37326 ATAATGCGACTTTTGTCAACAGTAAACTGAATAGCGTTTGCAGCAGGTTTTGTTCGCAAG 37385
Query 47022 TAATACATACCAGTCTTTAAACCTAAACT-CCATCCATAGAAATGCATACTAGTTAATTT 47080
|||||||| || || ||||| || | || |||| || ||||| || ||| | |||
Sbjct 37386 TAATACATTCCTGT-TTTAAGCCCAGCCTTCCATGAGTAAAAATGTATCGAAGTCAGTTT 37444
Query 47081 AGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACC 47140
||| | || |||| | |||||||||| || ||||| ||||| ||||| |||||
Sbjct 37445 TCCATAGTTGGGCTCTGCCACGTGAATATTAAAGGACTGACTTTGATCTATAAAAGCACC 37504
Query 47141 TCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAAT 47200
|||||||| ||||| | || | | | || |||||||| || || || |
Sbjct 37505 CCTATCAGCAGCCATTTTTATTGTTGATTTAACGGAGATTTCCCATACGGTCTTGTACAA 37564
Query 47201 TTGTTTAATGTCTTCTGGGAGA---TTAGTATTTTGAATAGATCCTCCgttttctataat 47257
| | | || || || | | | | | ||||||||||| || | | || ||| ||
Sbjct 37565 GTCTCGGACGTGTTGAGGAATAGAATCAATGTTTTGAATAGAACCACGGCTTGATATTAT 37624
Query 47258 tttgttttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGG 47317
|| ||| || | || | ||| || | ||| || || | || || ||| |
Sbjct 37625 TTGGTTCTTCATGTCGTCATCCCATAGGTCCAATTCTGTCAAATCTCGTAGTAGGTGATG 37684
Query 47318 ATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGG 47377
||| || | ||| ||||| ||||||| || | | | | || |||||| ||| || ||
Sbjct 37685 ATTTACTACTTGGAATTCACCAGATAACACCCGTCTGGTGTAAATATTAGATGTGTACGG 37744
Query 47378 TTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAAC 47437
|| | ||||||||||| || | ||||| ||||| |||||||||||||| | |||||
Sbjct 37745 CTCGAAGGATTCATTATTACCCATTATTTGGGCAGTGGATGCTGTAGGCATTGGTGCAAT 37804
Query 47438 TAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGT-TTCCAATCCC 47496
| || ||| | || || | ||| | || | || ||||| ||||
Sbjct 37805 AAGCAAAGAATTGCGAACGCCGTGTTTCTTAAT-TGACGTTTTAAGTGTATTCCAGTCCC 37863
Query 47497 AAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAG 47556
| | ||||| |||| |||||| | ||||| || | ||| |||||||| | ||
Sbjct 37864 ATAAATCTGTTGGAGTTTTATTCCACATGTCATACTGTAAAATACCTTTACTCACTGGGC 37923
Query 47557 AACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATG 47616
|| | |||||||| || || | | || ||||| || |||||||| || | |
Sbjct 37924 TGCCTTCATATGTTTCGTAGTAGCCATGTTCTTGTGCGAGCTCGCAACTTGCCTCGAGCG 37983
Query 47617 CACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAA 47676
| | | |||||||||| || || || | ||||||| ||| || |||
Sbjct 37984 CTCCAAAATATATTGTCTCGAAAATCTGCTGGTTTAGAAGAGATGCCTCATCGCTTTCGT 38043
Query 47677 AAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTC 47736
||||||| | || ||| || || || ||||||||||| ||||| || |
Sbjct 38044 AAGGATACCGCATTAAGATCAGTGCATCGGCAAAGCCCTGAACACCAATTCCAATAGGAC 38103
Query 47737 TATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTT 47796
|| || || || | ||| ||||||| ||||| ||| ||||| || ||||
Sbjct 38104 GGTGCCTTAAGTTCGATTTTTTAGCCTCTGGTAGAGGATAAAAGTTGATATCAATTATTT 38163
Query 47797 TATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGT 47856
| || | | ||| | ||||| ||||| || | || |
Sbjct 38164 TGTTCAAGTTTTTTGTAACAATCTTTGTTACATCTTTCAATTTTTTAAAGTCGTATTTTT 38223
Query 47857 TATTTATA---ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT 47913
| | | |||||| |||| || ||||| || |||| || || ||||| | ||||
Sbjct 38224 TTTCGGGAGTGACAAACATATTGAGGGCTATGGAAGCTAAGTTGCAAACAGCAATTTCAT 38283
Query 47914 TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAAT 47973
|| | ||| | | ||||| | ||||| ||| | ||||| || || || | |
Sbjct 38284 CAGGGGCGGAATACTCCACAATTTCGGTACATAAATTGCTGCATTTAATGGTTCCAACGT 38343
Query 47974 TTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTT 48033
|||| |||||| | ||||| | || ||| | |||||| | || || |||||||
Sbjct 38344 TTTGTTGATTACTTTTGCGATTACAGGAATCTTTGAACAGCATATATGGAGTACCAGTTT 38403
Query 48034 CTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTC---TAG 48090
||| ||||| ||||| |||| ||| | || | || || ||| | || |||
Sbjct 38404 CTACTTGAGACTCAATTATAGCAAACCACAGAGA--TTGCGCTT-TAATTGTTCGATTAG 38460
Query 48091 CTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTAT 48150
| || ||||| ||||| ||| | || ||||| || || || | |||| ||
Sbjct 38461 CACGGCCTTCCTGTTCATATTTGACATAGAGTTTATCAAACTCTTCTCCCCAAACATCAT 38520
Query 48151 CTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAG 48210
||| |||||||||| || || |||||||||||||||||||||| | || || |
Sbjct 38521 GTAAGCCAGGACATTTATGTGGGCACATCAATGACCAATCCTCATTAGCTTCAACACGCT 38580
Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCA 48269
||||||| | |||||||||||| | ||| ||| || | ||| | | | ||| ||
Sbjct 38581 TCATAAAAAGATCTGGTATCCATAAAGC-ATAGAAAAGATCTCGGGCACGATTTTCCTCC 38639
Query 48270 TTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAA 48329
|||||| | || |||| | || | ||| || | | || | |||||| |||||||||
Sbjct 38640 TTGCCAGTGTTTTTTTTTAAGTCTAAAAATTCAAACACGTCTGAATGCCAAGGTTCTAAA 38699
Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389
|| ||||| | |||| || || || |||||| || || | ||| | || |||
Sbjct 38700 TAAATTGCAAAGGCACCAGGACGCTTTCCACCTCCCTGGTCAACATAGCGAGCCACGTTG 38759
Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449
||| ||||||||| |||||| || | ||||||||| | ||||| ||||| | || ||
Sbjct 38760 TTAAAAACTCTTAGCATTGGCACCAAACCATTTGAAGTTCCATTAGTTCCACAGATCGAA 38819
Query 48450 CTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATT 48509
| || |||| | || || || || || ||||| || ||| |||||
Sbjct 38820 GTACCTTTAGCACGAATGCAGTGAACGTTTATCCCGATTCCACCAGCTGATTTGGATATC 38879
Query 48510 AGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAAT 48569
| || || ||| | || | | | |||||||| || |||| | | ||| | |
Sbjct 38880 ATTGCGCATTGTTCGACGGATTTAAATATTCCTTCAATTGAATCAGCCACCATCGTAAGA 38939
Query 48570 AGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCA 48629
|||||||| |||| |||||| || || ||| || | |||||| || |||
Sbjct 38940 AGAAAACACGACGACAGTTGCGGCCGATTTGTAGCTGCCGCGAAAAGTGTTGGCGAAGCA 38999
Query 48630 TGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCAT 48689
|| | || || ||| || | ||| || || ||||||| | | ||| |||||
Sbjct 39000 TGGGTGAAATATCGCTCGGAAAGCAAGTTGTACGTTTCAACTGCCGCATCGATATCTTCG 39059
Query 48690 TGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTA 48749
|||||| || || | |||||||||||||||| || || | |||| ||||||| |
Sbjct 39060 CCATGTATTCCAATGGCCACACGCATTAACATATGCTGTGGGCGTTCAGCAATTTTCCCA 39119
Query 48750 TTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAG 48809
||||| ||||| | |||||| ||| | |||||||| ||||||||||||||| ||||
Sbjct 39120 TTTATCTTCAATAAATATGAACGTTCAAGCGTTTTAAATCCAAAATAGTTGTATCCAAAG 39179
Query 48810 TCGTTATCATTAATAATTGATGAATTTA 48837
|| ||||| ||| || | ||| ||||
Sbjct 39180 TCCCGATCATAAATTATAGCTGAGTTTA 39207
>seq13173
Length=15772
Score = 203 bits (224), Expect = 4e-47
Identities = 475/714 (67%), Gaps = 2/714 (0%)
Strand=Plus/Minus
Query 18781 TCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATT 18840
|||| || || | ||| || ||||||| ||| ||| ||||| | ||||||||
Sbjct 14624 TCTACCAGCAGACGATCGGCGACAAATTCAATGTATTCAGACATCAGTTTGCAATTCATG 14565
Query 18841 CCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCT 18900
|| ||||| || || || | || ||||| || || || ||||| || ||| || |||
Sbjct 14564 CCAATTAAGTTTACGGGCAAAGCGTCTGTGAGGAACTCCTGTTCGATGACTACAGCATCT 14505
Query 18901 GATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAA 18960
|| || || | || | || | | ||| | | | ||||| | |||||||
Sbjct 14504 GAAATGATTTCAATAATGCGTTCACGACTGGGACGTTGAACCAGATGCTGGAACATCAGC 14445
Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020
|||||||| |||||||| |||||||| | || || ||||| || || || | |
Sbjct 14444 ACGGCAAAATCGCAATGTAGACCCTCGTCGCGTGAAATTAACTCATTTGAGAAGGTAAGA 14385
Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080
|| ||||| || || | || || ||||| || || ||||| || ||| ||||||
Sbjct 14384 CCGGGCATAAGACCGCGCTTCTTCAACCAAAAGATTGAAGCGAAGCTGCCACTAAAGAAG 14325
Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140
|| ||||| || || |||||||| | | | ||| ||| || | || | | | | | ||
Sbjct 14324 ATGCCTTCGACGGCGGCAAAAGCTATAATGCGTTCACCAAAATTGGC-TGACTTTGAAGA 14266
Query 19141 A-TCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199
| |||| || ||||| || ||||| ||||| |||||| ||||| || | |||
Sbjct 14265 AATCCAAGCGAGGGCCCAGTCCGCCTTGCGCTTTACTGCTGGCATAGTCTCAATCGCATT 14206
Query 19200 AAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259
|| ||||| || | || | ||| | ||| | || || | || ||||||||
Sbjct 14205 GAAAAGATAGTCGCGTTGATGAGGATCACGTATATAGGTGTCGATAAGTACGCTGTACAT 14146
Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319
||| ||||| | || || || || || || || || |||||||| | ||| || |||||
Sbjct 14145 TTCCGAATGCACGTTCTCCATGGCAATTTGGAAGCCATAAAAACAACGTGCCTCGGTTAT 14086
Query 19320 CTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379
||| || || | ||| | ||| |||| |||||| || || || ||||| || ||
Sbjct 14085 CTGCACCTCCTGGCTAAAGCGTTCTACCAGATTTTCGTTGACAATGCCATCTGATGCGGC 14026
Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATC 19439
|| ||||| || ||||| ||||| || |||| || | |||||||||
Sbjct 14025 GAAGAATGCCAACACATGAGATATAAAGTGACGCTCATTGTCAGTCAGGCGATTCCAATC 13966
Query 19440 ATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493
| || || || || | ||| || ||||| || ||||| ||||| || || ||
Sbjct 13965 TGTCATGTCCTTGGACAGATCCACCTCTTCGACCGTCCAGAAAGATGCTTCGGC 13912
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561868498488000
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