Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq20705 421 7e-113 seq13173 203 4e-47 >seq20705 Length=54059 Score = 421 bits (466), Expect = 7e-113 Identities = 1225/1888 (65%), Gaps = 19/1888 (1%) Strand=Plus/Plus Query 46963 ATAATTTGTCTTTT-TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAA 47021 ||||| | ||||| || |||||||||| ||| | || || | ||||||||| || Sbjct 37326 ATAATGCGACTTTTGTCAACAGTAAACTGAATAGCGTTTGCAGCAGGTTTTGTTCGCAAG 37385 Query 47022 TAATACATACCAGTCTTTAAACCTAAACT-CCATCCATAGAAATGCATACTAGTTAATTT 47080 |||||||| || || ||||| || | || |||| || ||||| || ||| | ||| Sbjct 37386 TAATACATTCCTGT-TTTAAGCCCAGCCTTCCATGAGTAAAAATGTATCGAAGTCAGTTT 37444 Query 47081 AGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACC 47140 ||| | || |||| | |||||||||| || ||||| ||||| ||||| ||||| Sbjct 37445 TCCATAGTTGGGCTCTGCCACGTGAATATTAAAGGACTGACTTTGATCTATAAAAGCACC 37504 Query 47141 TCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAAT 47200 |||||||| ||||| | || | | | || |||||||| || || || | Sbjct 37505 CCTATCAGCAGCCATTTTTATTGTTGATTTAACGGAGATTTCCCATACGGTCTTGTACAA 37564 Query 47201 TTGTTTAATGTCTTCTGGGAGA---TTAGTATTTTGAATAGATCCTCCgttttctataat 47257 | | | || || || | | | | | ||||||||||| || | | || ||| || Sbjct 37565 GTCTCGGACGTGTTGAGGAATAGAATCAATGTTTTGAATAGAACCACGGCTTGATATTAT 37624 Query 47258 tttgttttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGG 47317 || ||| || | || | ||| || | ||| || || | || || ||| | Sbjct 37625 TTGGTTCTTCATGTCGTCATCCCATAGGTCCAATTCTGTCAAATCTCGTAGTAGGTGATG 37684 Query 47318 ATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGG 47377 ||| || | ||| ||||| ||||||| || | | | | || |||||| ||| || || Sbjct 37685 ATTTACTACTTGGAATTCACCAGATAACACCCGTCTGGTGTAAATATTAGATGTGTACGG 37744 Query 47378 TTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAAC 47437 || | ||||||||||| || | ||||| ||||| |||||||||||||| | ||||| Sbjct 37745 CTCGAAGGATTCATTATTACCCATTATTTGGGCAGTGGATGCTGTAGGCATTGGTGCAAT 37804 Query 47438 TAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGT-TTCCAATCCC 47496 | || ||| | || || | ||| | || | || ||||| |||| Sbjct 37805 AAGCAAAGAATTGCGAACGCCGTGTTTCTTAAT-TGACGTTTTAAGTGTATTCCAGTCCC 37863 Query 47497 AAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAG 47556 | | ||||| |||| |||||| | ||||| || | ||| |||||||| | || Sbjct 37864 ATAAATCTGTTGGAGTTTTATTCCACATGTCATACTGTAAAATACCTTTACTCACTGGGC 37923 Query 47557 AACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATG 47616 || | |||||||| || || | | || ||||| || |||||||| || | | Sbjct 37924 TGCCTTCATATGTTTCGTAGTAGCCATGTTCTTGTGCGAGCTCGCAACTTGCCTCGAGCG 37983 Query 47617 CACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAA 47676 | | | |||||||||| || || || | ||||||| ||| || ||| Sbjct 37984 CTCCAAAATATATTGTCTCGAAAATCTGCTGGTTTAGAAGAGATGCCTCATCGCTTTCGT 38043 Query 47677 AAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTC 47736 ||||||| | || ||| || || || ||||||||||| ||||| || | Sbjct 38044 AAGGATACCGCATTAAGATCAGTGCATCGGCAAAGCCCTGAACACCAATTCCAATAGGAC 38103 Query 47737 TATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTT 47796 || || || || | ||| ||||||| ||||| ||| ||||| || |||| Sbjct 38104 GGTGCCTTAAGTTCGATTTTTTAGCCTCTGGTAGAGGATAAAAGTTGATATCAATTATTT 38163 Query 47797 TATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGT 47856 | || | | ||| | ||||| ||||| || | || | Sbjct 38164 TGTTCAAGTTTTTTGTAACAATCTTTGTTACATCTTTCAATTTTTTAAAGTCGTATTTTT 38223 Query 47857 TATTTATA---ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT 47913 | | | |||||| |||| || ||||| || |||| || || ||||| | |||| Sbjct 38224 TTTCGGGAGTGACAAACATATTGAGGGCTATGGAAGCTAAGTTGCAAACAGCAATTTCAT 38283 Query 47914 TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAAT 47973 || | ||| | | ||||| | ||||| ||| | ||||| || || || | | Sbjct 38284 CAGGGGCGGAATACTCCACAATTTCGGTACATAAATTGCTGCATTTAATGGTTCCAACGT 38343 Query 47974 TTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTT 48033 |||| |||||| | ||||| | || ||| | |||||| | || || ||||||| Sbjct 38344 TTTGTTGATTACTTTTGCGATTACAGGAATCTTTGAACAGCATATATGGAGTACCAGTTT 38403 Query 48034 CTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTC---TAG 48090 ||| ||||| ||||| |||| ||| | || | || || ||| | || ||| Sbjct 38404 CTACTTGAGACTCAATTATAGCAAACCACAGAGA--TTGCGCTT-TAATTGTTCGATTAG 38460 Query 48091 CTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTAT 48150 | || ||||| ||||| ||| | || ||||| || || || | |||| || Sbjct 38461 CACGGCCTTCCTGTTCATATTTGACATAGAGTTTATCAAACTCTTCTCCCCAAACATCAT 38520 Query 48151 CTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAG 48210 ||| |||||||||| || || |||||||||||||||||||||| | || || | Sbjct 38521 GTAAGCCAGGACATTTATGTGGGCACATCAATGACCAATCCTCATTAGCTTCAACACGCT 38580 Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCA 48269 ||||||| | |||||||||||| | ||| ||| || | ||| | | | ||| || Sbjct 38581 TCATAAAAAGATCTGGTATCCATAAAGC-ATAGAAAAGATCTCGGGCACGATTTTCCTCC 38639 Query 48270 TTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAA 48329 |||||| | || |||| | || | ||| || | | || | |||||| ||||||||| Sbjct 38640 TTGCCAGTGTTTTTTTTTAAGTCTAAAAATTCAAACACGTCTGAATGCCAAGGTTCTAAA 38699 Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389 || ||||| | |||| || || || |||||| || || | ||| | || ||| Sbjct 38700 TAAATTGCAAAGGCACCAGGACGCTTTCCACCTCCCTGGTCAACATAGCGAGCCACGTTG 38759 Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449 ||| ||||||||| |||||| || | ||||||||| | ||||| ||||| | || || Sbjct 38760 TTAAAAACTCTTAGCATTGGCACCAAACCATTTGAAGTTCCATTAGTTCCACAGATCGAA 38819 Query 48450 CTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATT 48509 | || |||| | || || || || || ||||| || ||| ||||| Sbjct 38820 GTACCTTTAGCACGAATGCAGTGAACGTTTATCCCGATTCCACCAGCTGATTTGGATATC 38879 Query 48510 AGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAAT 48569 | || || ||| | || | | | |||||||| || |||| | | ||| | | Sbjct 38880 ATTGCGCATTGTTCGACGGATTTAAATATTCCTTCAATTGAATCAGCCACCATCGTAAGA 38939 Query 48570 AGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCA 48629 |||||||| |||| |||||| || || ||| || | |||||| || ||| Sbjct 38940 AGAAAACACGACGACAGTTGCGGCCGATTTGTAGCTGCCGCGAAAAGTGTTGGCGAAGCA 38999 Query 48630 TGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCAT 48689 || | || || ||| || | ||| || || ||||||| | | ||| ||||| Sbjct 39000 TGGGTGAAATATCGCTCGGAAAGCAAGTTGTACGTTTCAACTGCCGCATCGATATCTTCG 39059 Query 48690 TGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTA 48749 |||||| || || | |||||||||||||||| || || | |||| ||||||| | Sbjct 39060 CCATGTATTCCAATGGCCACACGCATTAACATATGCTGTGGGCGTTCAGCAATTTTCCCA 39119 Query 48750 TTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAG 48809 ||||| ||||| | |||||| ||| | |||||||| ||||||||||||||| |||| Sbjct 39120 TTTATCTTCAATAAATATGAACGTTCAAGCGTTTTAAATCCAAAATAGTTGTATCCAAAG 39179 Query 48810 TCGTTATCATTAATAATTGATGAATTTA 48837 || ||||| ||| || | ||| |||| Sbjct 39180 TCCCGATCATAAATTATAGCTGAGTTTA 39207 >seq13173 Length=15772 Score = 203 bits (224), Expect = 4e-47 Identities = 475/714 (67%), Gaps = 2/714 (0%) Strand=Plus/Minus Query 18781 TCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATT 18840 |||| || || | ||| || ||||||| ||| ||| ||||| | |||||||| Sbjct 14624 TCTACCAGCAGACGATCGGCGACAAATTCAATGTATTCAGACATCAGTTTGCAATTCATG 14565 Query 18841 CCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCT 18900 || ||||| || || || | || ||||| || || || ||||| || ||| || ||| Sbjct 14564 CCAATTAAGTTTACGGGCAAAGCGTCTGTGAGGAACTCCTGTTCGATGACTACAGCATCT 14505 Query 18901 GATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAA 18960 || || || | || | || | | ||| | | | ||||| | ||||||| Sbjct 14504 GAAATGATTTCAATAATGCGTTCACGACTGGGACGTTGAACCAGATGCTGGAACATCAGC 14445 Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 |||||||| |||||||| |||||||| | || || ||||| || || || | | Sbjct 14444 ACGGCAAAATCGCAATGTAGACCCTCGTCGCGTGAAATTAACTCATTTGAGAAGGTAAGA 14385 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 || ||||| || || | || || ||||| || || ||||| || ||| |||||| Sbjct 14384 CCGGGCATAAGACCGCGCTTCTTCAACCAAAAGATTGAAGCGAAGCTGCCACTAAAGAAG 14325 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 || ||||| || || |||||||| | | | ||| ||| || | || | | | | | || Sbjct 14324 ATGCCTTCGACGGCGGCAAAAGCTATAATGCGTTCACCAAAATTGGC-TGACTTTGAAGA 14266 Query 19141 A-TCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 | |||| || ||||| || ||||| ||||| |||||| ||||| || | ||| Sbjct 14265 AATCCAAGCGAGGGCCCAGTCCGCCTTGCGCTTTACTGCTGGCATAGTCTCAATCGCATT 14206 Query 19200 AAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259 || ||||| || | || | ||| | ||| | || || | || |||||||| Sbjct 14205 GAAAAGATAGTCGCGTTGATGAGGATCACGTATATAGGTGTCGATAAGTACGCTGTACAT 14146 Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 ||| ||||| | || || || || || || || || |||||||| | ||| || ||||| Sbjct 14145 TTCCGAATGCACGTTCTCCATGGCAATTTGGAAGCCATAAAAACAACGTGCCTCGGTTAT 14086 Query 19320 CTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379 ||| || || | ||| | ||| |||| |||||| || || || ||||| || || Sbjct 14085 CTGCACCTCCTGGCTAAAGCGTTCTACCAGATTTTCGTTGACAATGCCATCTGATGCGGC 14026 Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATC 19439 || ||||| || ||||| ||||| || |||| || | ||||||||| Sbjct 14025 GAAGAATGCCAACACATGAGATATAAAGTGACGCTCATTGTCAGTCAGGCGATTCCAATC 13966 Query 19440 ATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 | || || || || | ||| || ||||| || ||||| ||||| || || || Sbjct 13965 TGTCATGTCCTTGGACAGATCCACCTCTTCGACCGTCCAGAAAGATGCTTCGGC 13912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561868498488000