Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq4982 224 8e-53
seq1773 114 1e-19
seq2802 96.9 3e-14
seq30905 86.0 5e-11
>seq4982
Length=30196
Score = 224 bits (248), Expect = 8e-53
Identities = 410/594 (69%), Gaps = 6/594 (1%)
Strand=Plus/Plus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
||| | ||||| ||||| || || || || ||| || ||||| | ||| |||| |||
Sbjct 19922 GCTGTTGGTATTGATTTGGGCACGACCTACTCTTGCGTGGGTGTGTTCCAACATGGCAAA 19981
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
||||| ||||||||||| ||||| ||||| | || || ||||| |||||| | ||||||
Sbjct 19982 GTTGAGATTATTGCCAACGATCAGGGTAATCGTACAACACCATCCTATGTTGCCTTCACG 20041
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| || || | ||| |||||||||| || ||| | || | | || || ||| |
Sbjct 20042 GAGACAGAGCGTTTGATTGGTGATGCTGCCAAAAACCAGGTGGCGATGAACCCAACCCAA 20101
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
|| || || ||||| || ||| | ||||| | | ||| | |||||| |||| ||| |
Sbjct 20102 ACAATCTTCGATGCCAAGCGTCTCATTGGTCGCAAGTTTGACGATTCGGCTGTGCAGTCG 20161
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291
||||||||||| ||||||||| | | || | ||| ||| || || | ||||| | |
Sbjct 20162 GATATGAAGCACTGGCCTTTCGAGGTGGTCAGCGTTGATGGCAAGCCAAAGATTGAGGTT 20221
Query 550292 ACTCATGAAG--GATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349
|| | ||| || | | || | ||| || || | || || || |||||| | |
Sbjct 20222 ACATACAAAGATGAAAAG-AAGACCTTCTTC-CCCGAGGAGATCTCCTCCATGGTTCTTA 20279
Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATA 550408
|| ||||| | || ||| | | || ||| ||||| || || |||| || ||
Sbjct 20280 CCAAGATGAAGGAGACTGCC-GAGGCTTACCTGGGCAAGACGGTGACCAATGCCGTCATC 20338
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
||||| || || || || || || ||||| ||||| || || || |||||||| ||
Sbjct 20339 ACTGTGCCTGCTTACTTCAACGATTCACAGCGTCAGGCGACCAAGGATGCTGGTACCATC 20398
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528
|| || | ||||| | |||||||| || || ||||| || ||||| |||| |||||
Sbjct 20399 GCCGGTTTAAATGTGTTGCGTATTATAAACGAGCCTACGGCCGCTGCCATTGCTTATGGT 20458
Query 550529 CTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGGT 550582
|| ||||| | || | || | |||||| ||||| || |||| || |||
Sbjct 20459 CTGGATAAGAAGGCTGTTGGCGAGCGTAATGTGCTCATTTTCGATTTGGGCGGT 20512
Score = 105 bits (116), Expect = 5e-17
Identities = 273/413 (66%), Gaps = 6/413 (1%)
Strand=Plus/Plus
Query 552180 TTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCC 552239
|||||||| || |||| || | | ||||||| || |||||||| || |||||||||
Sbjct 20966 TTCAATGGCAAGGAATTGAACAAGTCTATTAATCCCGACGAGGCTGTGGCTTATGGTGCC 21025
Query 552240 GCAATTCAAGCAGCTATTCTTTCTGG--ACAAA-CTGATGAAAAACTACAAAATATTGTA 552296
|| | || || || ||||| ||| ||||| || | ||| | || || || |
Sbjct 21026 GCTGTGCAGGCTGCCATTCTGCATGGTGACAAATCTCAGGAAG---TGCAGGATCTTTTG 21082
Query 552297 CTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAAT 552356
|| | |||||||| || || || || ||| | ||||| | || ||| | |||| |
Sbjct 21083 CTGCTCGATGTTACGCCCCTCTCCCTGGGTATCGAAACGGCCGGTGGTGTGATGAGTGTG 21142
Query 552357 CTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCA 552416
|||||| | | || || || || || || | | | ||| | || || ||
Sbjct 21143 CTTATCAAGCGCAACACCACCATCCCAACCAAGCAGACGCAGACATTCACCACCTACTCC 21202
Query 552417 GATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGAT 552476
|| ||||| ||| ||| ||||| | | || || || | | || || |||
Sbjct 21203 GACAATCAGCCTGGTGTGTTGATTCAGGTGTACGAGGGTGAGCGTGCGATGACAAAGGAT 21262
Query 552477 AATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCG 552536
|| |||| | || | || | | || |||||||| || || ||||| |||||
Sbjct 21263 AACAATCTCTTGGGCAAGTTCGAGCTGTCGGGCATTCCTCCAGCACCACGTGGTGTACCC 21322
Query 552537 CAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589
|||||||| || ||||||||||| || ||||| || ||||||||||| || ||
Sbjct 21323 CAAATTGAGGTAACTTTCGATATTGACGCCAACGGTATTTTGAATGTCACCGC 21375
>seq1773
Length=122071
Score = 114 bits (126), Expect = 1e-19
Identities = 268/399 (67%), Gaps = 4/399 (1%)
Strand=Plus/Plus
Query 550178 TTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATG 550237
||||||||||| || || |||||| | | || |||| | |||||| |||||||
Sbjct 70340 TTTGATGCTAAGCGCTTGATTGGACGCAAATTCGATGACCGCAAGATTCAGGAAGATATG 70399
Query 550238 AAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CTACTCA 550296
|| |||||||| ||| || | | || | ||| || || | || || | | | |
Sbjct 70400 AAACATTGGCCCTTCAAAGTGATCAACGACGGTGGCAAGCCAAAGATCGAGGTCGAGTT- 70458
Query 550297 TGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAAT 550356
| | ||| || | ||| |||| ||| |||| || |||||||| | |||||
Sbjct 70459 TAAGGGAGAACGCAAGCGTTTTGCACCGGAAGAAATCAGCTCGATGGTTTTGACAAAAAT 70518
Query 550357 GAAACAAACAGCCAGTGCTTTTGTTGGTCA-AGAAGTTACGGATGCAGTAATAACTGTAC 550415
| ||| || | | | | |||| | | |||||| ||| || ||||| || ||||
Sbjct 70519 GCGTGAAATCGCG-GAGGTCTATTTGGGCGGAAAAGTTAAGGACGCGGTAATCACAGTAC 70577
Query 550416 CAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGAC 550475
|||| ||||| || ||| ||||| || ||||| || ||||| || || || || |
Sbjct 70578 CAGCGTATTTCAACGACAGCCAACGCCAGGCTACAAAGGATGCGGGCACCATAGCGGGTC 70637
Query 550476 TTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATA 550535
| ||||| || || |||||||||||||| || || || || || || || || || || |
Sbjct 70638 TCAATGTCCTGCGCATTATCAATGAACCAACAGCAGCGGCTCTGGCCTACGGGCTGGACA 70697
Query 550536 AACATAATGATCAAGAACTTAATGTACTCATCTTTGATT 550574
|| || | | ||| | || || || ||||||||||
Sbjct 70698 AAAATCTTAAGGGAGAGCGCAACGTGCTAATCTTTGATT 70736
>seq2802
Length=25935
Score = 96.9 bits (106), Expect = 3e-14
Identities = 156/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375
||| | || || ||||||| | ||||| || || ||||| |||| ||| ||
Sbjct 20201 TTTGCCCCTGAGGAAATTTCTGCCATGGTGTTGGGCAAGATGAAGGAAACTGCCGAAGCC 20260
Query 550376 TTTGTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTC 550434
| | |||| |||||| || || |||| || | || || || || || || ||||| |
Sbjct 20261 TATCTTGG-CAAGAAAGTCACACATGCTGTCGTCACAGTCCCTGCCTACTTCAATGATGC 20319
Query 550435 ACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTAT 550494
||| ||||||||||| || ||||| || |||||||| || | || | || || ||
Sbjct 20320 ACAGCGTCAAGCTACCAAGGATGCCGGTGTCATTGCTGGTCTACAGGTGATGCGCATCAT 20379
Query 550495 CAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
||| ||||| ||||| ||||| |||| ||||| || || ||
Sbjct 20380 CAACGAACCCACTGCAGCTGCCATTGCCTATGGTCTGGACAA 20421
>seq30905
Length=22795
Score = 86.0 bits (94), Expect = 5e-11
Identities = 121/168 (72%), Gaps = 4/168 (2%)
Strand=Plus/Minus
Query 930661 TAATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTA 930720
||||||| || || || |||||||||||||| | ||||| |||| ||||| | || |
Sbjct 18136 TAATTGACTTCTCCTCCCCAAATATTGCCAAGCAGATGCACGTTGGCCATTTAAGATCGA 18077
Query 930721 CCATTATTGGAGAATCTTTATGTAGATTATATGAATATT--GTGGAAGTAAAGTTCATCG 930778
| || ||||| ||||| | ||||| | | |||| || | | | | | || | |||
Sbjct 18076 CTATAATTGGCGAATCCATTAGTAGACTGTTGGAATTTTTAGAGCACG--ATGTGCTTCG 18019
Query 930779 AGTCAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 930826
| || ||| | ||||||||||| || || ||||| ||||| |||||
Sbjct 18018 TATTAACCATTTGGGTGATTGGGGCACGCAGTTTGGCATGTTGATTGC 17971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4027487349758000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |