Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4982 224 8e-53 seq1773 114 1e-19 seq2802 96.9 3e-14 seq30905 86.0 5e-11 >seq4982 Length=30196 Score = 224 bits (248), Expect = 8e-53 Identities = 410/594 (69%), Gaps = 6/594 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | ||||| ||||| || || || || ||| || ||||| | ||| |||| ||| Sbjct 19922 GCTGTTGGTATTGATTTGGGCACGACCTACTCTTGCGTGGGTGTGTTCCAACATGGCAAA 19981 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||| ||||||||||| ||||| ||||| | || || ||||| |||||| | |||||| Sbjct 19982 GTTGAGATTATTGCCAACGATCAGGGTAATCGTACAACACCATCCTATGTTGCCTTCACG 20041 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | ||| |||||||||| || ||| | || | | || || ||| | Sbjct 20042 GAGACAGAGCGTTTGATTGGTGATGCTGCCAAAAACCAGGTGGCGATGAACCCAACCCAA 20101 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || || ||||| || ||| | ||||| | | ||| | |||||| |||| ||| | Sbjct 20102 ACAATCTTCGATGCCAAGCGTCTCATTGGTCGCAAGTTTGACGATTCGGCTGTGCAGTCG 20161 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||||||||| ||||||||| | | || | ||| ||| || || | ||||| | | Sbjct 20162 GATATGAAGCACTGGCCTTTCGAGGTGGTCAGCGTTGATGGCAAGCCAAAGATTGAGGTT 20221 Query 550292 ACTCATGAAG--GATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 || | ||| || | | || | ||| || || | || || || |||||| | | Sbjct 20222 ACATACAAAGATGAAAAG-AAGACCTTCTTC-CCCGAGGAGATCTCCTCCATGGTTCTTA 20279 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATA 550408 || ||||| | || ||| | | || ||| ||||| || || |||| || || Sbjct 20280 CCAAGATGAAGGAGACTGCC-GAGGCTTACCTGGGCAAGACGGTGACCAATGCCGTCATC 20338 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || || || ||||| ||||| || || || |||||||| || Sbjct 20339 ACTGTGCCTGCTTACTTCAACGATTCACAGCGTCAGGCGACCAAGGATGCTGGTACCATC 20398 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || | ||||| | |||||||| || || ||||| || ||||| |||| ||||| Sbjct 20399 GCCGGTTTAAATGTGTTGCGTATTATAAACGAGCCTACGGCCGCTGCCATTGCTTATGGT 20458 Query 550529 CTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGGT 550582 || ||||| | || | || | |||||| ||||| || |||| || ||| Sbjct 20459 CTGGATAAGAAGGCTGTTGGCGAGCGTAATGTGCTCATTTTCGATTTGGGCGGT 20512 Score = 105 bits (116), Expect = 5e-17 Identities = 273/413 (66%), Gaps = 6/413 (1%) Strand=Plus/Plus Query 552180 TTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCC 552239 |||||||| || |||| || | | ||||||| || |||||||| || ||||||||| Sbjct 20966 TTCAATGGCAAGGAATTGAACAAGTCTATTAATCCCGACGAGGCTGTGGCTTATGGTGCC 21025 Query 552240 GCAATTCAAGCAGCTATTCTTTCTGG--ACAAA-CTGATGAAAAACTACAAAATATTGTA 552296 || | || || || ||||| ||| ||||| || | ||| | || || || | Sbjct 21026 GCTGTGCAGGCTGCCATTCTGCATGGTGACAAATCTCAGGAAG---TGCAGGATCTTTTG 21082 Query 552297 CTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAAT 552356 || | |||||||| || || || || ||| | ||||| | || ||| | |||| | Sbjct 21083 CTGCTCGATGTTACGCCCCTCTCCCTGGGTATCGAAACGGCCGGTGGTGTGATGAGTGTG 21142 Query 552357 CTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCA 552416 |||||| | | || || || || || || | | | ||| | || || || Sbjct 21143 CTTATCAAGCGCAACACCACCATCCCAACCAAGCAGACGCAGACATTCACCACCTACTCC 21202 Query 552417 GATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGAT 552476 || ||||| ||| ||| ||||| | | || || || | | || || ||| Sbjct 21203 GACAATCAGCCTGGTGTGTTGATTCAGGTGTACGAGGGTGAGCGTGCGATGACAAAGGAT 21262 Query 552477 AATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCG 552536 || |||| | || | || | | || |||||||| || || ||||| ||||| Sbjct 21263 AACAATCTCTTGGGCAAGTTCGAGCTGTCGGGCATTCCTCCAGCACCACGTGGTGTACCC 21322 Query 552537 CAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 |||||||| || ||||||||||| || ||||| || ||||||||||| || || Sbjct 21323 CAAATTGAGGTAACTTTCGATATTGACGCCAACGGTATTTTGAATGTCACCGC 21375 >seq1773 Length=122071 Score = 114 bits (126), Expect = 1e-19 Identities = 268/399 (67%), Gaps = 4/399 (1%) Strand=Plus/Plus Query 550178 TTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATG 550237 ||||||||||| || || |||||| | | || |||| | |||||| ||||||| Sbjct 70340 TTTGATGCTAAGCGCTTGATTGGACGCAAATTCGATGACCGCAAGATTCAGGAAGATATG 70399 Query 550238 AAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CTACTCA 550296 || |||||||| ||| || | | || | ||| || || | || || | | | | Sbjct 70400 AAACATTGGCCCTTCAAAGTGATCAACGACGGTGGCAAGCCAAAGATCGAGGTCGAGTT- 70458 Query 550297 TGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAAT 550356 | | ||| || | ||| |||| ||| |||| || |||||||| | ||||| Sbjct 70459 TAAGGGAGAACGCAAGCGTTTTGCACCGGAAGAAATCAGCTCGATGGTTTTGACAAAAAT 70518 Query 550357 GAAACAAACAGCCAGTGCTTTTGTTGGTCA-AGAAGTTACGGATGCAGTAATAACTGTAC 550415 | ||| || | | | | |||| | | |||||| ||| || ||||| || |||| Sbjct 70519 GCGTGAAATCGCG-GAGGTCTATTTGGGCGGAAAAGTTAAGGACGCGGTAATCACAGTAC 70577 Query 550416 CAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGAC 550475 |||| ||||| || ||| ||||| || ||||| || ||||| || || || || | Sbjct 70578 CAGCGTATTTCAACGACAGCCAACGCCAGGCTACAAAGGATGCGGGCACCATAGCGGGTC 70637 Query 550476 TTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATA 550535 | ||||| || || |||||||||||||| || || || || || || || || || || | Sbjct 70638 TCAATGTCCTGCGCATTATCAATGAACCAACAGCAGCGGCTCTGGCCTACGGGCTGGACA 70697 Query 550536 AACATAATGATCAAGAACTTAATGTACTCATCTTTGATT 550574 || || | | ||| | || || || |||||||||| Sbjct 70698 AAAATCTTAAGGGAGAGCGCAACGTGCTAATCTTTGATT 70736 >seq2802 Length=25935 Score = 96.9 bits (106), Expect = 3e-14 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375 ||| | || || ||||||| | ||||| || || ||||| |||| ||| || Sbjct 20201 TTTGCCCCTGAGGAAATTTCTGCCATGGTGTTGGGCAAGATGAAGGAAACTGCCGAAGCC 20260 Query 550376 TTTGTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTC 550434 | | |||| |||||| || || |||| || | || || || || || || ||||| | Sbjct 20261 TATCTTGG-CAAGAAAGTCACACATGCTGTCGTCACAGTCCCTGCCTACTTCAATGATGC 20319 Query 550435 ACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTAT 550494 ||| ||||||||||| || ||||| || |||||||| || | || | || || || Sbjct 20320 ACAGCGTCAAGCTACCAAGGATGCCGGTGTCATTGCTGGTCTACAGGTGATGCGCATCAT 20379 Query 550495 CAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||| ||||| ||||| ||||| |||| ||||| || || || Sbjct 20380 CAACGAACCCACTGCAGCTGCCATTGCCTATGGTCTGGACAA 20421 >seq30905 Length=22795 Score = 86.0 bits (94), Expect = 5e-11 Identities = 121/168 (72%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 930661 TAATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTA 930720 ||||||| || || || |||||||||||||| | ||||| |||| ||||| | || | Sbjct 18136 TAATTGACTTCTCCTCCCCAAATATTGCCAAGCAGATGCACGTTGGCCATTTAAGATCGA 18077 Query 930721 CCATTATTGGAGAATCTTTATGTAGATTATATGAATATT--GTGGAAGTAAAGTTCATCG 930778 | || ||||| ||||| | ||||| | | |||| || | | | | | || | ||| Sbjct 18076 CTATAATTGGCGAATCCATTAGTAGACTGTTGGAATTTTTAGAGCACG--ATGTGCTTCG 18019 Query 930779 AGTCAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 930826 | || ||| | ||||||||||| || || ||||| ||||| ||||| Sbjct 18018 TATTAACCATTTGGGTGATTGGGGCACGCAGTTTGGCATGTTGATTGC 17971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027487349758000