Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq5260 89.7 4e-13 >seq5260 Length=19401 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 29800 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 29859 |||| || ||||| || | || || || || | |||||||| |||||| ||||| || Sbjct 12350 TTCAATGGATCCACATGGTTCAAATACACATGCGTGTCTCCCATGGTGTGCACAAAGTCG 12291 Query 29860 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29919 ||||| | || || || || ||||| |||||||| ||||| | | || ||| ||| Sbjct 12290 CCCGGCTTGAGGCCAGTCACATGAGCGATCATGTAGGTGAGCAACGCATACGAGGCAATG 12231 Query 29920 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCT 29979 |||||||| || || | |||||||| | | || || | |||||| || ||||| Sbjct 12230 TTAAAGGGCACACCCAAACCCATGTCAGCGCTTCGTTGATATAACTGACAGGACAGCTCG 12171 Query 29980 CC 29981 || Sbjct 12170 CC 12169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408447283076600