Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq10079 123 2e-23 seq30232 116 3e-21 >seq10079 Length=19992 Score = 123 bits (136), Expect = 2e-23 Identities = 200/286 (70%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 13651 ATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCG 13710 || |||||| ||||| || || | | | ||||| | ||||| || ||| |||| | ||| Sbjct 12667 ATCGAATTTGCGTTTGCACCCCTGATAGTTCATATAGCGTATCTTTCCAAAGATAGATCG 12726 Query 13711 CTCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTT 13770 ||| ||||| | | || || || | || |||||||||||||| | || || || Sbjct 12727 TTCCTTCCAGCCTTGGTCATGCACCCCACCAATAGACCACATGCAACCCACGTAGCCATT 12786 Query 13771 GGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATT--AAAGCC 13828 ||||| || |||||||| ||||| || ||||| | |||| || | | | || Sbjct 12787 AGGATCCCGCCCATCCAAGCTGTACTTATCGTTTAGCAATAT--TGTAAACTCCAGTGCT 12844 Query 13829 ACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCG 13888 || || || | |||||| || || ||||| |||||||| |||| || | |||| Sbjct 12845 TCTTCTGGTGAGGCGGTCCATTCCAAAATCTTTTTGGCCCAATACATTCGCAGAAATCCA 12904 Query 13889 TGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACA 13934 ||||||||||||| | || ||||| ||| |||| |||||||| Sbjct 12905 TGCATTTTGCCTTCCTTTACCAGCTGCAACTGCGCAGAGTTCCACA 12950 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 13651 ATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCG 13710 || |||||| ||||| || || | | | ||||| | ||||| || ||| |||| | ||| Sbjct 12469 ATCGAATTTGCGTTTGCACCCCTGATAGTTCATATAGCGTATCTTTCCAAAGATAGATCG 12528 Query 13711 CTCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTT 13770 ||| ||||| | | || || || | || |||||||||||||| | || || || Sbjct 12529 TTCCTTCCAGCCTTGGTCATGCACCCCACCAATAGACCACATGCAACCCACGTAGCCATT 12588 Query 13771 GGGATCGCGTCCATCCAAACTGTATTTGTCGTT 13803 ||||| || |||||||| ||||| || ||||| Sbjct 12589 AGGATCCCGCCCATCCAAGCTGTACTTATCGTT 12621 >seq30232 Length=15380 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | || || || || || || ||||| |||| | ||| | | || ||| Sbjct 15122 ACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 15181 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || ||||||||||| || |||||| Sbjct 15182 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGA 15241 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | || || || | |||||||| ||||||| || ||| Sbjct 15242 ATCTTGGCCTTAACATTCTCAATGGTATCTGAGGGCTCCACTTCGAGAGTGATGGTCTTG 15301 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || || || || |||||||| Sbjct 15302 CCAGTCAAGGTCTTCACGAAGATCTGCAT 15330 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| | || || || | || || || || || || ||||| |||| | ||| | Sbjct 14885 AAACGGAGCACCAAGTGCAATGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGT 14944 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 | || |||| ||||| || || || ||||||||||| ||||| || ||||||||||| Sbjct 14945 CCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCC 15004 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 || ||||| || || || ||| | || | || || || | |||||||| |||||| Sbjct 15005 TTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCTGAGGGCTCCACTTCGAGAGTG 15064 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || ||||| || || || || || || |||||||| Sbjct 15065 ATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 15102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396113226209400