Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6675 140 2e-28 seq20705 96.9 3e-15 >seq6675 Length=94874 Score = 140 bits (154), Expect = 2e-28 Identities = 217/305 (71%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 9001 CCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTA-ACC-TCTA 9058 |||||||| ||||| || |||| || || | ||||| || | || ||| ||| Sbjct 58955 CCGGTTGAACCAAAACCGGCCTCGCCACGTTCAGTGTCT-TCCAGCTTGTCCACCATCT- 59012 Query 9059 CCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCA 9118 ||||| || || ||||| | |||||||| ||||||||||| | ||| || |||| Sbjct 59013 CCAGTTCCGGGTAGAAGATGCGCTCACAAATGAATTGAGCAATGCGGTCGCCACGCTTCA 59072 Query 9119 CGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCT 9178 | ||||||| ||||| || |||||||| || || || |||| ||| || | || || | Sbjct 59073 CCTCAAAGTCGGTGTCTGAGTGATTGAAGAGGACGACGCCCAGGTTGCCGCGATAGTCTT 59132 Query 9179 CATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCG 9238 | || | |||||| || || || || ||||||| ||| ||||| || || || || || | Sbjct 59133 CGTCCACCACACCGGCGCCAACATCAATGAAGTTCTTCACCGCCAGGCCGGAACGTGGGG 59192 Query 9239 CGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCCT 9298 | | || ||||| ||||| | || | ||||||| ||| || ||| | || | | | | Sbjct 59193 CCACGCGTCCGTATGATCCCTCTGGCACTTGCACCTGCAGATCAGTCTTTACAATCGCTT 59252 Query 9299 TGCCG 9303 ||||| Sbjct 59253 TGCCG 59257 >seq20705 Length=54059 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || | || |||||||||||| ||||| || || ||| | ||| Sbjct 6869 AGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGA 6928 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| || || || ||||| ||||| || |||||||| | |||| ||||| Sbjct 6929 CCATCTTCCAATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCT 6988 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | | || || | || ||||| | || Sbjct 6989 TTGTCCTGAATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTG 7048 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| | || || || ||||||||||| Sbjct 7049 ATGGTCTTGCCCGTTAGGGTCTTAACGAAAATCTGCAT 7086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380778820446600