Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq6675 140 2e-28
seq20705 96.9 3e-15
>seq6675
Length=94874
Score = 140 bits (154), Expect = 2e-28
Identities = 217/305 (71%), Gaps = 4/305 (1%)
Strand=Plus/Plus
Query 9001 CCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTA-ACC-TCTA 9058
|||||||| ||||| || |||| || || | ||||| || | || ||| |||
Sbjct 58955 CCGGTTGAACCAAAACCGGCCTCGCCACGTTCAGTGTCT-TCCAGCTTGTCCACCATCT- 59012
Query 9059 CCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCA 9118
||||| || || ||||| | |||||||| ||||||||||| | ||| || ||||
Sbjct 59013 CCAGTTCCGGGTAGAAGATGCGCTCACAAATGAATTGAGCAATGCGGTCGCCACGCTTCA 59072
Query 9119 CGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCT 9178
| ||||||| ||||| || |||||||| || || || |||| ||| || | || || |
Sbjct 59073 CCTCAAAGTCGGTGTCTGAGTGATTGAAGAGGACGACGCCCAGGTTGCCGCGATAGTCTT 59132
Query 9179 CATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCG 9238
| || | |||||| || || || || ||||||| ||| ||||| || || || || || |
Sbjct 59133 CGTCCACCACACCGGCGCCAACATCAATGAAGTTCTTCACCGCCAGGCCGGAACGTGGGG 59192
Query 9239 CGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCCT 9298
| | || ||||| ||||| | || | ||||||| ||| || ||| | || | | | |
Sbjct 59193 CCACGCGTCCGTATGATCCCTCTGGCACTTGCACCTGCAGATCAGTCTTTACAATCGCTT 59252
Query 9299 TGCCG 9303
|||||
Sbjct 59253 TGCCG 59257
>seq20705
Length=54059
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | |||||| || | || |||||||||||| ||||| || || ||| | |||
Sbjct 6869 AGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGA 6928
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||| || || || ||||| ||||| || |||||||| | |||| |||||
Sbjct 6929 CCATCTTCCAATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCT 6988
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| |||||| ||| ||| | | | || || | || ||||| | ||
Sbjct 6989 TTGTCCTGAATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTG 7048
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || ||||| | || || || |||||||||||
Sbjct 7049 ATGGTCTTGCCCGTTAGGGTCTTAACGAAAATCTGCAT 7086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380778820446600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |