Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4982 235 4e-56 seq1773 136 3e-26 seq20705 120 2e-21 seq14783 104 2e-16 seq30905 96.9 2e-14 >seq4982 Length=30196 Score = 235 bits (260), Expect = 4e-56 Identities = 385/547 (70%), Gaps = 6/547 (1%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| ||| || | ||| | ||| |||| ||||| | Sbjct 19926 TTGGTATTGATTTGGGCACGACCTACTCTTGCGTGGGTGTGTTCCAACATGGCAAAGTTG 19985 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || |||||||| || || |||||| | ||||||||||| |||||| | || || || | Sbjct 19986 AGATTATTGCCAACGATCAGGGTAATCGTACAACACCATCCTATGTTGCCTTCACGGAGA 20045 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | | | ||||| |||||||| ||| | || | || || || | || | Sbjct 20046 CAGAGCGTTTGATTGGTGATGCTGCCAAAAACCAGGTGGCGATGAACCCAACCCAAACAA 20105 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || ||||| || | | |||||||| || ||||| ||| | |||| || || |||| Sbjct 20106 TCTTCGATGCCAAGCGTCTCATTGGTCGCAAGTTTGACGATTCGGCTGTGCAGTCGGATA 20165 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAATAC 474632 || || |||||||| ||||| | | |||| ||| || ||| | || || | | | Sbjct 20166 TGAAGCACTGGCCTTTCGAGGTGGTCAGCGTTGATGGCAAGCCAAAGATTGAGGTTACAT 20225 Query 474633 ACGCAGGTGAAACTAA-ACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAA 474691 || || ||||| || || | ||| || || | || || || |||||| | |||| Sbjct 20226 ACAAAGATGAAAAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCCATGGTTCTTACCAAG 20284 Query 474692 ATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACTG 474749 ||||| | || | |||| | || | ||| ||||| || || |||| || || |||| Sbjct 20285 ATGAAGGAGACTGCCGAG-GCTTA-CCTGGGCAAGACGGTGACCAATGCCGTCATCACTG 20342 Query 474750 TTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAG 474809 | || || || || || ||||| || ||||| || || || ||||| || | || || | Sbjct 20343 TGCCTGCTTACTTCAACGATTCACAGCGTCAGGCGACCAAGGATGCTGGTACCATCGCCG 20402 Query 474810 GTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869 || | ||||| || |||||||| || || || || || || || ||||||||||||| | Sbjct 20403 GTTTAAATGTGTTGCGTATTATAAACGAGCCTACGGCCGCTGCCATTGCTTATGGTCTGG 20462 Query 474870 ATAAGAA 474876 ||||||| Sbjct 20463 ATAAGAA 20469 >seq1773 Length=122071 Score = 136 bits (150), Expect = 3e-26 Identities = 273/400 (68%), Gaps = 6/400 (2%) Strand=Plus/Plus Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 ||||||||||| | |||||||| || || || ||||| || | || |||||| Sbjct 70340 TTTGATGCTAAGCGCTTGATTGGACGCAAATTCGATGACCGCAAGATTCAGGAAGATATG 70399 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AATAC 474632 |||||||| || || ||||| || | ||||| || ||| | || || | | | Sbjct 70400 AAACATTGGCCCTTCAAAGTGATCAACGACGGTGGCAAGCCAAAGATCGAGGTCGAGTTT 70459 Query 474633 ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAA 474692 | | || ||| || | ||| |||||||| |||| || |||||||| | |||| Sbjct 70460 AAG--GGAGAACGCAAGCGTTTTGCACCGGAAGAAATCAGCTCGATGGTTTTGACAAAAA 70517 Query 474693 TGAAACAAACCGCG-AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTT 474751 || ||| |||| || || ||| | || | |||| | || || ||||| || || Sbjct 70518 TGCGTGAAATCGCGGAGGTC-TATTTGGGCGGAAAAGTTAAGGACGCGGTAATCACAGTA 70576 Query 474752 CCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGT 474811 ||||| ||||| || || ||||| || || || || |||||||| | || || ||| Sbjct 70577 CCAGCGTATTTCAACGACAGCCAACGCCAGGCTACAAAGGATGCGGGCACCATAGCGGGT 70636 Query 474812 CTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGAT 474871 || ||||| | || ||||| ||||||||||||||||| || || || || || || || Sbjct 70637 CTCAATGTCCTGCGCATTATCAATGAACCAACAGCAGCGGCTCTGGCCTACGGGCTGGAC 70696 Query 474872 AAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATT 474911 || ||| | | ||| || || |||||||||||| Sbjct 70697 AAAAATCTTAAGGGAGAGCGCAACGTGCTAATCTTTGATT 70736 Score = 95.1 bits (104), Expect = 8e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 |||||||||||||| || || || ||| || |||| |||||||||| | || ||| Sbjct 70092 ATTGGTATTGATTTGGGCACAACGTACTCGTGCGTAGGTGTTTGGCAACACAACAAGGTA 70151 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || || |||||||| || || ||| | ||||| || ||||| | || | |||| Sbjct 70152 GAGATCATAGCCAATGATCAGGGCAATCGGACAACGCCCAGCTATGTGGCATTCAATGAA 70211 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCA 474486 || || | | | ||||| |||||||| ||| |||| Sbjct 70212 ACGGAGCGTTTAATTGGCGATGCTGCGAAAAATCA 70246 >seq20705 Length=54059 Score = 120 bits (132), Expect = 2e-21 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || | || | |||| ||||| || || || || | ||||| Sbjct 6865 ACGGAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGT 6924 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| | ||| || |||||||| || |||||||||||||| ||||||||||| Sbjct 6925 GCGACCATCTTCCAATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCC 6984 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 || ||||| |||||||| ||||||| ||| || ||||| | || ||||| Sbjct 6985 CTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAG 7044 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || || || |||||||||||||| || Sbjct 7045 GGTGATGGTCTTGCCCGTTAGGGTCTTAACGAAAATCTG 7083 >seq14783 Length=131557 Score = 104 bits (114), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 |||||| | ||||| || || || || || ||||| ||||| || ||||| || ||||| Sbjct 77881 GCAGTAGTGACTGTGCCTGCTTACTTCAACGATTCACAACGACAGGCAACAAAGGATGCT 77822 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || |||||| ||| | ||||| || ||| ||||||||||||| ||||| || || | Sbjct 77821 GGTCAAATTGCTGGTTTGAATGTGTTGCGTGTTATTAATGAACCCACAGCGGCGGCGTTG 77762 Query 474857 GCTTATGGTCTTGATAA 474873 || |||||| | ||||| Sbjct 77761 GCCTATGGTATGGATAA 77745 >seq30905 Length=22795 Score = 96.9 bits (106), Expect = 2e-14 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 817095 TAATAGATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTA 817154 |||| || || || || ||||||||||| ||| | ||||| |||| || || ||||| | Sbjct 18136 TAATTGACTTCTCCTCCCCAAATATTGCCAAGCAGATGCACGTTGGCCATTTAAGATCGA 18077 Query 817155 CAATAATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAA 817214 | |||||||| ||||| || ||||| | | ||||||| | || || | | | Sbjct 18076 CTATAATTGGCGAATCCATTAGTAGACTGTTGGAATTTTTAGAGCACGATGTGCTTCGTA 18017 Query 817215 TAAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 817260 | || ||| | ||||||||||| || || ||||| ||||| ||||| Sbjct 18016 TTAACCATTTGGGTGATTGGGGCACGCAGTTTGGCATGTTGATTGC 17971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266712196061600