Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq4982 235 4e-56
seq1773 136 3e-26
seq20705 120 2e-21
seq14783 104 2e-16
seq30905 96.9 2e-14
>seq4982
Length=30196
Score = 235 bits (260), Expect = 4e-56
Identities = 385/547 (70%), Gaps = 6/547 (1%)
Strand=Plus/Plus
Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392
||||||||||||| || || || ||| ||| || | ||| | ||| |||| ||||| |
Sbjct 19926 TTGGTATTGATTTGGGCACGACCTACTCTTGCGTGGGTGTGTTCCAACATGGCAAAGTTG 19985
Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452
| || |||||||| || || |||||| | ||||||||||| |||||| | || || || |
Sbjct 19986 AGATTATTGCCAACGATCAGGGTAATCGTACAACACCATCCTATGTTGCCTTCACGGAGA 20045
Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512
| || | | | ||||| |||||||| ||| | || | || || || | || |
Sbjct 20046 CAGAGCGTTTGATTGGTGATGCTGCCAAAAACCAGGTGGCGATGAACCCAACCCAAACAA 20105
Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572
| || ||||| || | | |||||||| || ||||| ||| | |||| || || ||||
Sbjct 20106 TCTTCGATGCCAAGCGTCTCATTGGTCGCAAGTTTGACGATTCGGCTGTGCAGTCGGATA 20165
Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAATAC 474632
|| || |||||||| ||||| | | |||| ||| || ||| | || || | | |
Sbjct 20166 TGAAGCACTGGCCTTTCGAGGTGGTCAGCGTTGATGGCAAGCCAAAGATTGAGGTTACAT 20225
Query 474633 ACGCAGGTGAAACTAA-ACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAA 474691
|| || ||||| || || | ||| || || | || || || |||||| | ||||
Sbjct 20226 ACAAAGATGAAAAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCCATGGTTCTTACCAAG 20284
Query 474692 ATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACTG 474749
||||| | || | |||| | || | ||| ||||| || || |||| || || ||||
Sbjct 20285 ATGAAGGAGACTGCCGAG-GCTTA-CCTGGGCAAGACGGTGACCAATGCCGTCATCACTG 20342
Query 474750 TTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAG 474809
| || || || || || ||||| || ||||| || || || ||||| || | || || |
Sbjct 20343 TGCCTGCTTACTTCAACGATTCACAGCGTCAGGCGACCAAGGATGCTGGTACCATCGCCG 20402
Query 474810 GTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869
|| | ||||| || |||||||| || || || || || || || ||||||||||||| |
Sbjct 20403 GTTTAAATGTGTTGCGTATTATAAACGAGCCTACGGCCGCTGCCATTGCTTATGGTCTGG 20462
Query 474870 ATAAGAA 474876
|||||||
Sbjct 20463 ATAAGAA 20469
>seq1773
Length=122071
Score = 136 bits (150), Expect = 3e-26
Identities = 273/400 (68%), Gaps = 6/400 (2%)
Strand=Plus/Plus
Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574
||||||||||| | |||||||| || || || ||||| || | || ||||||
Sbjct 70340 TTTGATGCTAAGCGCTTGATTGGACGCAAATTCGATGACCGCAAGATTCAGGAAGATATG 70399
Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AATAC 474632
|||||||| || || ||||| || | ||||| || ||| | || || | | |
Sbjct 70400 AAACATTGGCCCTTCAAAGTGATCAACGACGGTGGCAAGCCAAAGATCGAGGTCGAGTTT 70459
Query 474633 ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAA 474692
| | || ||| || | ||| |||||||| |||| || |||||||| | ||||
Sbjct 70460 AAG--GGAGAACGCAAGCGTTTTGCACCGGAAGAAATCAGCTCGATGGTTTTGACAAAAA 70517
Query 474693 TGAAACAAACCGCG-AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTT 474751
|| ||| |||| || || ||| | || | |||| | || || ||||| || ||
Sbjct 70518 TGCGTGAAATCGCGGAGGTC-TATTTGGGCGGAAAAGTTAAGGACGCGGTAATCACAGTA 70576
Query 474752 CCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGT 474811
||||| ||||| || || ||||| || || || || |||||||| | || || |||
Sbjct 70577 CCAGCGTATTTCAACGACAGCCAACGCCAGGCTACAAAGGATGCGGGCACCATAGCGGGT 70636
Query 474812 CTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGAT 474871
|| ||||| | || ||||| ||||||||||||||||| || || || || || || ||
Sbjct 70637 CTCAATGTCCTGCGCATTATCAATGAACCAACAGCAGCGGCTCTGGCCTACGGGCTGGAC 70696
Query 474872 AAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATT 474911
|| ||| | | ||| || || ||||||||||||
Sbjct 70697 AAAAATCTTAAGGGAGAGCGCAACGTGCTAATCTTTGATT 70736
Score = 95.1 bits (104), Expect = 8e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391
|||||||||||||| || || || ||| || |||| |||||||||| | || |||
Sbjct 70092 ATTGGTATTGATTTGGGCACAACGTACTCGTGCGTAGGTGTTTGGCAACACAACAAGGTA 70151
Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451
|| || || |||||||| || || ||| | ||||| || ||||| | || | ||||
Sbjct 70152 GAGATCATAGCCAATGATCAGGGCAATCGGACAACGCCCAGCTATGTGGCATTCAATGAA 70211
Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCA 474486
|| || | | | ||||| |||||||| ||| ||||
Sbjct 70212 ACGGAGCGTTTAATTGGCGATGCTGCGAAAAATCA 70246
>seq20705
Length=54059
Score = 120 bits (132), Expect = 2e-21
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| || ||||| || | || | |||| ||||| || || || || | |||||
Sbjct 6865 ACGGAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGT 6924
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| |||||| | ||| || |||||||| || |||||||||||||| |||||||||||
Sbjct 6925 GCGACCATCTTCCAATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCC 6984
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
|| ||||| |||||||| ||||||| ||| || ||||| | || |||||
Sbjct 6985 CTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAG 7044
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||| || || || || || || |||||||||||||| ||
Sbjct 7045 GGTGATGGTCTTGCCCGTTAGGGTCTTAACGAAAATCTG 7083
>seq14783
Length=131557
Score = 104 bits (114), Expect = 2e-16
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796
|||||| | ||||| || || || || || ||||| ||||| || ||||| || |||||
Sbjct 77881 GCAGTAGTGACTGTGCCTGCTTACTTCAACGATTCACAACGACAGGCAACAAAGGATGCT 77822
Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856
|| |||||| ||| | ||||| || ||| ||||||||||||| ||||| || || |
Sbjct 77821 GGTCAAATTGCTGGTTTGAATGTGTTGCGTGTTATTAATGAACCCACAGCGGCGGCGTTG 77762
Query 474857 GCTTATGGTCTTGATAA 474873
|| |||||| | |||||
Sbjct 77761 GCCTATGGTATGGATAA 77745
>seq30905
Length=22795
Score = 96.9 bits (106), Expect = 2e-14
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 817095 TAATAGATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTA 817154
|||| || || || || ||||||||||| ||| | ||||| |||| || || ||||| |
Sbjct 18136 TAATTGACTTCTCCTCCCCAAATATTGCCAAGCAGATGCACGTTGGCCATTTAAGATCGA 18077
Query 817155 CAATAATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAA 817214
| |||||||| ||||| || ||||| | | ||||||| | || || | | |
Sbjct 18076 CTATAATTGGCGAATCCATTAGTAGACTGTTGGAATTTTTAGAGCACGATGTGCTTCGTA 18017
Query 817215 TAAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 817260
| || ||| | ||||||||||| || || ||||| ||||| |||||
Sbjct 18016 TTAACCATTTGGGTGATTGGGGCACGCAGTTTGGCATGTTGATTGC 17971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3266712196061600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |