Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq20705 114 7e-21 >seq20705 Length=54059 Score = 114 bits (126), Expect = 7e-21 Identities = 310/468 (66%), Gaps = 5/468 (1%) Strand=Plus/Plus Query 25899 ATAAATG-CCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATT 25957 || |||| |||||| |||| ||||| || |||||| | |||||| ||||| | Sbjct 38547 ATCAATGACCAATCCTCATTAGCTTCAACACGCTTCATAAAAAGATCTGGTATCCATAAA 38606 Query 25958 GCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAA 26016 ||||| || | ||||| || | |||| || || || ||| || ||||| || ||||| Sbjct 38607 GCATAGAAAAGATCTCGGGCACGATTTTCCTCCTTGCCAGTGTTTTTTTTTAAG-TCTAA 38665 Query 26017 GAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTT 26076 || ||||| | ||||| ||||| ||||||||||| || ||||| ||| | || Sbjct 38666 AAATTCAAACACGTCTGAATGCCAAGGTTCTAAATAAATTGCAAAGGCACCAGGACGCTT 38725 Query 26077 TCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAA 26136 ||| || || || || || || | || | || |||||| | | |||||| || || Sbjct 38726 TCCACCTCCCTGGTCAACATAGCGAGCCACGTTGTTAAAAACTCTTAGCATTGGCACCAA 38785 Query 26137 TCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGC 26196 ||| ||||| ||| || || | | ||| | ||| | | | ||| |||| | Sbjct 38786 ACCATTTGAAGTTCCATTAGTTCCACAGATCGAAGTACCTTTAGCACGAATGCAGTGAAC 38845 Query 26197 ATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAA 26256 | || |||||||||||||| |||| || || ||| || | | || | | || Sbjct 38846 GTTTATCCCGATTCCACCAGCTGATTTGGATATCATTGCGCATTGTTCGACGGATTTAAA 38905 Query 26257 AATTCCTTTTATGCTATCACCTTTCATTCCTAATAA-AAAACAAGAAGATAATTGCGAAT 26315 ||||||| || |||| | || || ||| || |||||| || || | ||||| Sbjct 38906 TATTCCTTCAATTGAATCAGCCACCA-TCGTAAGAAGAAAACACGACGACAGTTGCGGCC 38964 Query 26316 GAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATC 26363 || |||| ||| || | ||| || | |||||| || |||||| Sbjct 38965 GATTTGTAGCTGCCGCGAAAAGTGTTGGCGAAGCATGGGTGAAATATC 39012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252934529765000