Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq24651 145 2e-29 seq16804 140 1e-27 seq20407 109 2e-18 >seq24651 Length=33304 Score = 145 bits (160), Expect = 2e-29 Identities = 188/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || |||||||||||||| ||||| ||| | ||||| ||||| ||| Sbjct 21994 TCCATAGCCTTTATCAAACGACGCTGAATGTAACCTGTTTCTGCAGTTTTGACAGCAGTA 21935 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| |||| |||||||| ||||||||| | | |||| ||| || || Sbjct 21934 TCGATCAGACCTTCACGGCCACCCATGGCATGGAAGTAGAACTCTGAAGGTGTCAGACCG 21875 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAG 302754 | | | ||||| ||||||| || ||||||| |||||| || ||| ||| | ||| Sbjct 21874 GCCAGATAGGAGTTCTCAACAAACCCACGCGACTCGGGACCATAATCGTCTTTGATGAAG 21815 Query 302755 TGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGT 302814 || |||| || | || | | || || || ||||| || || |||||||||||||| Sbjct 21814 TGCGGCAATGTACGCTTGCGAAAACCATAGGGAATACGTTTGCCCTCAACGTTCTGCTGC 21755 Query 302815 CCCAGGCACGAAATCATCTG 302834 |||| || | ||| | ||| Sbjct 21754 CCCACACAAGCAATAACCTG 21735 >seq16804 Length=18983 Score = 140 bits (154), Expect = 1e-27 Identities = 215/305 (70%), Gaps = 4/305 (1%) Strand=Plus/Minus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| ||| |||| || ||||| ||||| || || | ||||| || || || Sbjct 9028 TTCCATAGCCTTAATTAGGCGTCGCTGTATATAGCCCGTCTCGGCGGTTTTAACTGCGGT 8969 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCC 302693 |||||| ||||| | || |||||||| ||||||||| | | |||| ||||| || || Sbjct 8968 ATCAATCAGACCCTCTCGTCCACCCATCGCATGGAAGTAGAACTCTGCCGGTGTCAGACC 8909 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGC--GAATCGTCGAACTTGGTA 302751 || | | ||| ||||||| |||||||| | ||| ||| ||| ||| |||| Sbjct 8908 AGTAAGATAAGAGTTCTCAACAAAACCACGGGACTCCGGCTCGAA--GTCCCCCTTGTGG 8851 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || ||||| || || | || |||| | || || || ||||| || ||||||||| Sbjct 8850 AAATGTGGTAGAGTGCGCCGCTTGAAGCCCCACGGTATTCGTTTTCCCTCCACGTTCTGC 8791 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTT 302871 || || | |||| |||| ||| || | |||| | |||||||||||||| ||| | Sbjct 8790 TGGCCGACACACGCTATCACCTGAGATACGTTTATGTTGCTGCCCTTGGAGCCGGCAATC 8731 Query 302872 ACCAT 302876 ||||| Sbjct 8730 ACCAT 8726 >seq20407 Length=18981 Score = 109 bits (120), Expect = 2e-18 Identities = 149/205 (73%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||| ||||||||| |||||| || |||||||| ||||||||||||||| ||| || | Sbjct 7335 CGATTGTCATACGAGAGGGAATGGCGTGGGGATTAATGATGATGTCGGGTGCCAGACCCT 7394 Query 251903 CAGCAGTGAAGGGCATATCCTTTTCCT--CAATAATG-TTTCCAATAGTTCCCTTTTGTC 251959 | |||||||||||| ||| |||| | ||| || | || || || || || | Sbjct 7395 CGCAAGTGAAGGGCATGTCC---TCCTGGCGATACTGAATACCGCACGTGCCTTTCTGGC 7451 Query 251960 CGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCT 252019 ||||||| || |||||| || ||||| || ||| || ||| | ||||| || Sbjct 7452 CGTGACGTGAGGCGAACTTGTCGCCAATTTGTGGTATGCGTACCGAACGCACGCGAATCT 7511 Query 252020 TACAGAAGTTGTAACCATCACCGTT 252044 ||||||| ||||| || |||| ||| Sbjct 7512 TACAGAATTTGTAGCCCTCACTGTT 7536 Score = 104 bits (114), Expect = 7e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| ||||| ||||||||||||||| || |||||||| |||||||| || ||| Sbjct 6764 GCACCGTGAGAAATTTGACAATCACGCTCCATCTCGCCGAAACGTAGACCACCGTCTCGA 6823 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 || || ||||| ||||||||| ||| | || ||||||| | ||| || Sbjct 6824 GCTCTGCCCTCCATAGGCTGACGCACTAGAATTTGCACAGGACCGCGAGCACGGGAGTGA 6883 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACC 251651 ||||| | ||||| |||||||||||||| ||| | | ||| || Sbjct 6884 ATTTTATCGTCCACCATGTGCTTGAGACGCTGATAGTAAGTGGGGCC 6930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471172667925400