Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201
5-05-28] 34,200 sequences; 187,416,727 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq22704 122 1e-21
seq10779 113 6e-19
seq3725 89.7 6e-12
>seq22704
Length=12761
Score = 122 bits (134), Expect = 1e-21
Identities = 141/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165
|||| |||||||||||||| ||| | ||||| || ||| | ||||| || |
Sbjct 10404 AGAAACGCACCGACGACATTTCGTCTTGGGATGCCGATTTTCTTAAAGTCGATCAAGGAA 10463
Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225
| ||||| || |||||| | || || |||||| | || || || | ||||| |
Sbjct 10464 CACTCTTCGAATTGATCTTGGCTGCAAACTACTTGGATATTAAAGGGTTACTCGAGTTGA 10523
Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285
|||||| |||||||||| ||||| || || ||| | ||||||||||||||||||||||
Sbjct 10524 CCTGCAAGACTGTGGCCAATATGATAAAAGGAAAGACTCCCGAGGAGATCCGCAAGACCT 10583
Query 1592286 TTAACATCAA 1592295
||||||||||
Sbjct 10584 TTAACATCAA 10593
>seq10779
Length=11833
Score = 113 bits (124), Expect = 6e-19
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 1592105 CAGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCC 1592164
|||| |||||| |||||||| || ||||| |||||| | | ||||| ||| ||
Sbjct 252 CAGAGGCGCACAGACGACATTCCGGAATGGGATGTTGAGTTTCTCAAAGTCGATCAGGCC 311
Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224
|| ||||||| || | | || ||||||||| | ||||||||| ||||| | |
Sbjct 312 ACGCTCTTTGGACTGCTTGTGGCAGCCAACTACTTGGACATCAAGGAGTTGCTCAAATTA 371
Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284
| |||||| |||||||||| ||||||||||| ||| | |||||||| ||| | |
Sbjct 372 GTCTGCAAGACTGTGGCCAATATGATCAAGGGAAAGAACTCTGAGGAGATTCGCCATATT 431
Query 1592285 TTTAACATCAAG 1592296
||| ||||||||
Sbjct 432 TTTCACATCAAG 443
>seq3725
Length=29921
Score = 89.7 bits (98), Expect = 6e-12
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 1852483 CCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCCG 1852542
||| |||| ||| |||||| || | |||||||| ||||||||| || || | ||
Sbjct 16293 CCATGGCGCCTTCATGTTGTCCAGATAGGCGTGCAAGTCGGCAAAAAGAATGGTACCCTC 16352
Query 1852543 ACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAAGTAGCCTAGGTGCGG 1852602
||||||||||| ||| ||||| || | || | ||||||||||||||| | | || ||
Sbjct 16353 ACAGCCGGCCTTGAGGAAGTCCGCTATCTTTGACATGGGCACAAAGTAGGCCACATGAGG 16412
Query 1852603 GTTGCCCGTCGGCGCCGTGCCCCAATA 1852629
||||| || | || || ||||| ||
Sbjct 16413 CTTGCCGGTTGTTGCAGTTCCCCAGTA 16439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6104332587841400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |