Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq22704 122 1e-21 seq10779 113 6e-19 seq3725 89.7 6e-12 >seq22704 Length=12761 Score = 122 bits (134), Expect = 1e-21 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||| |||||||||||||| ||| | ||||| || ||| | ||||| || | Sbjct 10404 AGAAACGCACCGACGACATTTCGTCTTGGGATGCCGATTTTCTTAAAGTCGATCAAGGAA 10463 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | ||||| || |||||| | || || |||||| | || || || | ||||| | Sbjct 10464 CACTCTTCGAATTGATCTTGGCTGCAAACTACTTGGATATTAAAGGGTTACTCGAGTTGA 10523 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| |||||||||| ||||| || || ||| | |||||||||||||||||||||| Sbjct 10524 CCTGCAAGACTGTGGCCAATATGATAAAAGGAAAGACTCCCGAGGAGATCCGCAAGACCT 10583 Query 1592286 TTAACATCAA 1592295 |||||||||| Sbjct 10584 TTAACATCAA 10593 >seq10779 Length=11833 Score = 113 bits (124), Expect = 6e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 1592105 CAGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCC 1592164 |||| |||||| |||||||| || ||||| |||||| | | ||||| ||| || Sbjct 252 CAGAGGCGCACAGACGACATTCCGGAATGGGATGTTGAGTTTCTCAAAGTCGATCAGGCC 311 Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 || ||||||| || | | || ||||||||| | ||||||||| ||||| | | Sbjct 312 ACGCTCTTTGGACTGCTTGTGGCAGCCAACTACTTGGACATCAAGGAGTTGCTCAAATTA 371 Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 | |||||| |||||||||| ||||||||||| ||| | |||||||| ||| | | Sbjct 372 GTCTGCAAGACTGTGGCCAATATGATCAAGGGAAAGAACTCTGAGGAGATTCGCCATATT 431 Query 1592285 TTTAACATCAAG 1592296 ||| |||||||| Sbjct 432 TTTCACATCAAG 443 >seq3725 Length=29921 Score = 89.7 bits (98), Expect = 6e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 1852483 CCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCCG 1852542 ||| |||| ||| |||||| || | |||||||| ||||||||| || || | || Sbjct 16293 CCATGGCGCCTTCATGTTGTCCAGATAGGCGTGCAAGTCGGCAAAAAGAATGGTACCCTC 16352 Query 1852543 ACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAAGTAGCCTAGGTGCGG 1852602 ||||||||||| ||| ||||| || | || | ||||||||||||||| | | || || Sbjct 16353 ACAGCCGGCCTTGAGGAAGTCCGCTATCTTTGACATGGGCACAAAGTAGGCCACATGAGG 16412 Query 1852603 GTTGCCCGTCGGCGCCGTGCCCCAATA 1852629 ||||| || | || || ||||| || Sbjct 16413 CTTGCCGGTTGTTGCAGTTCCCCAGTA 16439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104332587841400