Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq22953 140 3e-28 seq20705 96.9 3e-15 >seq22953 Length=19288 Score = 140 bits (154), Expect = 3e-28 Identities = 158/210 (75%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGG 34496 ||||| |||||||| || |||| ||||| || || || || || || || |||| || Sbjct 3920 ATCGAATTGCGTTTGGGCACCCAATTCGCAACCAAAATATTTGGTAGGATATGTGGCAGG 3979 Query 34497 ACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCC 34556 |||||||| ||| || | ||| | ||| || |||| || ||||| ||||| ||||| Sbjct 3980 ACGTCCAATAGCCCGCGCAACTTCAGCCATATTTACGAGCACGGTCTTAATGCCATTGCC 4039 Query 34557 CTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614 ||| || ||||||||||| |||| ||||||||||||||| |||||||| |||| | Sbjct 4040 CTTACCCTCGACCTTGGCCTGCAG--GCGCGGCATTTTGTAACGGTAGAAAATATCCGTC 4097 Query 34615 ACATTGCGGTTAACGTTCACAGTCCCCATC 34644 ||| | ||||| || || || || ||||| Sbjct 4098 ACACTTCGGTTTACATTAACGGTGGCCATC 4127 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 34255 CCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATG 34314 |||||| |||||||||| ||||| || | || | | ||||| || || ||| | Sbjct 2419 CCGTGAAAACCGCATGCCTTGCAAGATTGGGAAATGGTTTGGTTTTTGGCCGATACGCTC 2478 Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 | | ||||| || ||||| |||||||| ||||||||||||||||| || || ||||| Sbjct 2479 AAGTTGGTCTCAGGATTGTCGCATTCCGGGCACAACACAAACTTGCGAATAAATCCATCC 2538 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 | || || || |||||| | ||| || || || || || || || ||||| || Sbjct 2539 AAAAGATCTTGCAACTTATTGACGTCATGCGAACCATTAACAATAAAACGTTCATT 2594 >seq20705 Length=54059 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || || || |||| ||||| ||||| ||| | || || ||| Sbjct 7087 AATGCAGATTTTCGTTAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTCGAACCTTC 7028 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| ||| | || ||| |||||| |||||||| || | || ||||| Sbjct 7027 GGATACAATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCA 6968 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||| | || || | ||| || ||||| |||| |||| | || || | || ||||| Sbjct 6967 ACAACGTCTGATCTTTGCTGGCAAACAATTGGAAGATGGTCGCACTCTGTCCGACTACAA 6908 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||||||||| ||||| |||||| ||||| Sbjct 6907 CATTCAAAAAGAGTCTACATTGCACTTGGTG 6877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412669522460600