Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq20705 116 4e-21 >seq20705 Length=54059 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || || || | |||||| |||||||| |||||||| ||| || |||| ||||| Sbjct 6878 ACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCATCTTCC 6937 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | |||||| |||||| ||||||||||||| ||||| ||||| || || |||||||| | Sbjct 6938 AATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGA 6997 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || || ||| | | ||| | || || | ||||| || |||| || | |||||| Sbjct 6998 ATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTG 7057 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || | || || ||||| || ||||| Sbjct 7058 CCCGTTAGGGTCTTAACGAAAATCTGCAT 7086 Score = 114 bits (126), Expect = 1e-20 Identities = 472/734 (64%), Gaps = 19/734 (3%) Strand=Plus/Plus Query 150722 TTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTAC-TGTGAAACGG 150780 || || ||||| ||||| || || || || ||||| | | |||| |||| | ||| Sbjct 37686 TTTACTACTTGGAATTCACCAGATAACACCCGTCTGGTGTAAATATTAGATGTGTA-CGG 37744 Query 150781 TTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCAC 150840 || || || || || || | |||||| || || | || || ||||| || | Sbjct 37745 CTCGAAGGATTCATTATTACCCATTATTTGGGCAGTGGATGCTGTAGGCATTGGTGCAAT 37804 Query 150841 AAGCAATGAATTACGTAATCCGTATTTTTGTATATTTAT-TTTCAACTGTGA-CCAGTCC 150898 |||||| ||||| || | |||| ||| | || ||| | ||| || ||| ||||||| Sbjct 37805 AAGCAAAGAATTGCGAACGCCGTGTTTCT-TA-ATTGACGTTTTAAGTGTATTCCAGTCC 37862 Query 150899 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTG 150958 ||||| || || ||||||||| || || || || || |||| ||| || | Sbjct 37863 CATAAATCTGTTGGAGTTTTATTCCACATGTCATACTGTAAAATACCTTTACTCACTGGG 37922 Query 150959 CTACCGGCAAACGTGCTATAAGGCTCACTAACAGATGCCAGTTCGTAACTGGCCTCGAGC 151018 || || || | || || || | ||| || ||| |||| ||||||||| Sbjct 37923 CTGCCTTCATATGTTTCGTAGTAGCCATGTTCTTGTGCGAGCTCGCAACTTGCCTCGAGC 37982 Query 151019 GCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACG 151078 || || ||| | || || ||| || | || | ||| || ||||||| || Sbjct 37983 GCTCCAAAATATATTGTCTCGAAAATCTGCTGGTTTAGAAGAGATGCCTCATCGCTTTCG 38042 Query 151079 TACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGA 151138 || || |||| | | | ||||||||| || || |||| || || || || ||| Sbjct 38043 TAAGGATACCGCATTAAGATCAGTGCATCGGCAAAGCCCTGAACACCAATTCCAATAGGA 38102 Query 151139 CGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATT 151198 || || | | || |||||||| || | | ||| || || ||| |||||| ||| Sbjct 38103 CGGTGCCTTAAGTTCGATTTTTTAGCCTCTGGTAGAGGATAAAAGTTGATATCAATTATT 38162 Query 151199 TTATTCAAACTATTCACTACA-TGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGT 151257 || ||||| | || ||| | |||| ||| | |||| || ||| || || Sbjct 38163 TTGTTCAAGTTTTTTGTAACAATCTTTGTT-ACATCTTTCAATTTTTTAAAGTC----GT 38217 Query 151258 ATCATTATT-------GATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAG 151310 || || || || | | |||||| ||| || || |||| || || || ||| Sbjct 38218 ATTTTTTTTCGGGAGTGACAAACATATTGAGGGCTATGGAAGCTAAGTTGCAAACAGCAA 38277 Query 151311 TTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATC 151370 |||| || || ||| |||| | || ||||| | ||| |||||||||||||| || || Sbjct 38278 TTTCATCAGGGGCGGAATACTCCACAATTTCGGTACATAAATTGCTGCATTTAATGGTTC 38337 Query 151371 CGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGC 151430 | || |||||| |||||||| || || | || ||| | | ||| || || || | Sbjct 38338 CAACGTTTTGTTGATTACTTTTGCGATTACAGGAATCTTTGAACAGCATATATGGAGTAC 38397 Query 151431 CGGTTTCGGCTTGA 151444 | ||||| ||||| Sbjct 38398 CAGTTTCTACTTGA 38411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488335147440000