Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_023848.1 Length=163023 Score E Sequences producing significant alignments: (Bits) Value seq12991 96.9 4e-15 seq20407 89.7 5e-13 >seq12991 Length=13810 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/166 (75%), Gaps = 5/166 (3%) Strand=Plus/Minus Query 21735 CTCAGCTACGCATACCCGAAATAGGCGACAAGTTCTGTTC-CGGCATGGCCCAGAAAGGC 21793 ||| ||| ||||| ||| ||||||| ||||| ||| ||| || ||||||| |||| ||| Sbjct 2390 CTCCGCT-CGCATTCCCCAAATAGGTGACAAATTCGCTTCGCGTCATGGCC-AGAAGGGC 2333 Query 21794 ACCTGCGGGATGATCTATTCGCAAGAAAACATGCCATTCACATCTTCCGGCATGACCCCC 21853 |||||||| || | || || ||| | |||||||||| ||||| || ||| Sbjct 2332 ACCTGCGGCATTACGTACCGCCAGGAAGATCTGCCATTCACCAACGAAGGCATTACACCC 2273 Query 21854 GACATCATCATCAACCCCAACTGC-ATTCCCTCCAGAATGACCATT 21898 |||||||| || ||||| | ||| ||||||||| | ||||||||| Sbjct 2272 GACATCATTATTAACCCGCA-TGCTATTCCCTCCCGCATGACCATT 2228 >seq20407 Length=18981 Score = 89.7 bits (98), Expect = 5e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 21741 TACGCATACCCGAAATAGGCGACAAGTTCTGTTC-CGGCATGGCCCAGAAAGGCACCTGC 21799 |||||||||| |||| |||||||||||| || || || |||| |||||||||| ||| Sbjct 7493 TACGCATACCACAAATTGGCGACAAGTTCGCCTCACGTCACGGCC-AGAAAGGCACGTGC 7435 Query 21800 GGGATGATCTATTCGCAAGAAAACATGCCATTCACATCTTCCGGCATGACCCCCGACATC 21859 || || ||| || || ||||||| ||||| | || || | ||||||||| Sbjct 7434 GGTATTCAGTATCGCCAGGAGGACATGCCCTTCACTTGCGAGGGTCTGGCACCCGACATC 7375 Query 21860 ATCATCAACCCCAACTGCATTCCCTCCAGAATGACCAT 21897 ||||| || ||| || ||||||||| | ||||| || Sbjct 7374 ATCATTAATCCCCACGCCATTCCCTCTCGTATGACAAT 7337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521322639256000