Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scaptodrosophila_20lebanonensis_20[genbank_20GCA_5F001014445.1_20201 5-05-28] 34,200 sequences; 187,416,727 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq20705 172 1e-37 seq10079 158 2e-33 seq30232 147 4e-30 >seq20705 Length=54059 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||||| ||||| ||||| || || || || || || ||| | | ||| Sbjct 6872 CGGAGCACCAAGTGCAATGTAGACTCTTTTTGAATGTTGTAGTCGGACAGAGTGCGACCA 6931 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | |||||| ||||||||||| || | ||||||||||||||| ||||| || || Sbjct 6932 TCTTCCAATTGTTTGCCAGCAAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCTTTG 6991 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| ||||| |||||||| || ||||| |||||| || || | || || Sbjct 6992 TCCTGAATCTTGGCTTTGACATTTTCGATTGTATCCGAAGGTTCGACCTCAAGGGTGATG 7051 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 |||||||| || | ||||| || || ||||||||||| Sbjct 7052 GTCTTGCCCGTTAGGGTCTTAACGAAAATCTGCATTAT 7089 >seq10079 Length=19992 Score = 158 bits (174), Expect = 2e-33 Identities = 210/289 (73%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 198338 TCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAG 198397 ||| ||||| | |||| | ||| || ||| ||||| ||||||||| | ||| | | Sbjct 12952 TCTGTGGAACTCTGCGCAGTTGCAGCTGGTAAAGGAAGGCAAAATGCATGGATTTCTGCG 12893 Query 198398 AATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTTG-AGTT 198456 |||||| ||||| |||||||| | |||||||| |||| ||||| || || |||| Sbjct 12892 AATGTATTGGGCCAAAAAGATTTTGGAATGGACCGCCTCACCAGAAGAAGCACTGGAGTT 12833 Query 198457 ATAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAG 198516 || || | |||||| |||||||| | || || ||||||||| || ||||| | Sbjct 12832 -TACAATATTGCTAAACGATAAGTACAGCTTGGATGGGCGGGATCCTAATGGCTACGTGG 12774 Query 198517 GTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATTTG 198576 |||| |||||||||||| | || | ||||| | || ||||| ||| || |||| |||| Sbjct 12773 GTTGCATGTGGTCTATTGGTGGGGTGCATGACCAAGGCTGGAAGGAACGATCTATCTTTG 12714 Query 198577 GGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGT 198625 | |||||| | |||||||| ||| |||| | || ||||| ||||| Sbjct 12713 GAAAGATACGCTATATGAACTATCAGGGGTGCAAACGCAAATTCGATGT 12665 Score = 109 bits (120), Expect = 1e-18 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 198436 CACCGGAAGACGCTTTG-AGTTATAGTATCTATCTAAACAATAAGTACGAACTAGACGGC 198494 |||| ||||| || || |||| || || | |||||| |||||||| | || || Sbjct 12656 CACCAGAAGAAGCACTGGAGTT-TACAATATTGCTAAACGATAAGTACAGCTTGGATGGG 12598 Query 198495 ACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCG 198554 ||||||||| || ||||| ||||| |||||||||||| | || | ||||| | || Sbjct 12597 CGGGATCCTAATGGCTACGTGGGTTGCATGTGGTCTATTGGTGGGGTGCATGACCAAGGC 12538 Query 198555 TGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAA 198614 ||||| ||| || |||| ||||| |||||| | |||||||| ||| |||| | || Sbjct 12537 TGGAAGGAACGATCTATCTTTGGAAAGATACGCTATATGAACTATCAGGGGTGCAAACGC 12478 Query 198615 AAATTTGATGTTGCTGC 198631 ||||| ||||| |||| Sbjct 12477 AAATTCGATGTGACTGC 12461 >seq30232 Length=15380 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || |||| ||| || || ||||| || || || || | Sbjct 15102 TACCACCACGGAGACGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGG 15161 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||||| || || || || ||||| ||||| | | || |||||||| | Sbjct 15162 ACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGG 15221 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||| || || ||||| ||||| ||||| || || | Sbjct 15222 GAATGCCTTCCTTGTCTTGAATCTTGGCCTTAACATTCTCAATGGTATCTGAGGGCTCCA 15281 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || |||||||| ||||| ||||| || || |||||||| Sbjct 15282 CTTCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 15330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981396975593800